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  1. Article

    Open Access

    Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development

    Despite substantial progress in cancer microbiome research, recognized confounders and advances in absolute microbiome quantification remain underused; this raises concerns regarding potential spurious associa...

    Raúl Y. Tito, Sara Verbandt, Marta Aguirre Vazquez, Leo Lahti in Nature Medicine (2024)

  2. Article

    Open Access

    The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice

    Anorexia nervosa (AN) is an eating disorder with a high mortality. About 95% of cases are women and it has a population prevalence of about 1%, but evidence-based treatment is lacking. The pathogenesis of AN p...

    Yong Fan, René Klinkby Støving, Samar Berreira Ibraim in Nature Microbiology (2023)

  3. Article

    Open Access

    Microbiome and metabolome features of the cardiometabolic disease spectrum

    Previous microbiome and metabolome analyses exploring non-communicable diseases have paid scant attention to major confounders of study outcomes, such as common, pre-morbid and co-morbid conditions, or polypha...

    Sebastien Fromentin, Sofia K. Forslund, Kanta Chechi in Nature Medicine (2022)

  4. Article

    Open Access

    Variation and transmission of the human gut microbiota across multiple familial generations

    Although the composition and functional potential of the human gut microbiota evolve over the lifespan, kinship has been identified as a key covariate of microbial community diversification. However, to date, ...

    Mireia Valles-Colomer, Rodrigo Bacigalupe, Sara Vieira-Silva in Nature Microbiology (2022)

  5. No Access

    Article

    Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

    Recent population-based14 and clinical studies5 have identified a range of factors associated with human gut microbiome variation. Murine quantitative trait loci6, human twin studies7 and microbiome genome-wide ...

    David A. Hughes, Rodrigo Bacigalupe, Jun Wang, Malte C. Rühlemann in Nature Microbiology (2020)

  6. No Access

    Article

    Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses

    Recent work has highlighted the importance of confounder control in microbiome association studies1,2. For instance, multiple pathologies previously linked to gut ecosystem dysbiosis display concomitant changes i...

    Sara Vieira-Silva, João Sabino, Mireia Valles-Colomer, Gwen Falony in Nature Microbiology (2019)

  7. No Access

    Article

    Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study

    Metabolic syndrome is characterized by a constellation of comorbidities that predispose individuals to an increased risk of develo** cardiovascular pathologies as well as type 2 diabetes mellitus1. The gut micr...

    Clara Depommier, Amandine Everard, Céline Druart, Hubert Plovier in Nature Medicine (2019)

  8. No Access

    Article

    The neuroactive potential of the human gut microbiota in quality of life and depression

    The relationship between gut microbial metabolism and mental health is one of the most intriguing and controversial topics in microbiome research. Bidirectional microbiota–gut–brain communication has mostly be...

    Mireia Valles-Colomer, Gwen Falony, Youssef Darzi in Nature Microbiology (2019)

  9. No Access

    Article

    Richness and ecosystem development across faecal snapshots of the gut microbiota

    Faecal microbiota richness is considered a hallmark of gut health and stability. However, in healthy hosts, richness would primarily reflect the stage of ecosystem development through the gut, rather than comm...

    Gwen Falony, Sara Vieira-Silva, Jeroen Raes in Nature Microbiology (2018)

  10. No Access

    Article

    Species–function relationships shape ecological properties of the human gut microbiome

    Despite recent progress, the organization and ecological properties of the intestinal microbial ecosystem remain under-investigated. Here, using a manually curated metabolic module framework for (meta-)genomic...

    Sara Vieira-Silva, Gwen Falony, Youssef Darzi, Gipsi Lima-Mendez in Nature Microbiology (2016)