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  1. Article

    Open Access

    Population genetic structure of Culex tritaeniorhynchus in different types of climatic zones in China

    Culex tritaeniorhynchus is widely distributed in China, from Hainan Island in the south to Heilongjiang in the north, covering tropical, subtropical, and temperate climate zones. Culex tritaeniorhynchus carries 1...

    Ye Zhang, Haifang Wang, Jun Du, Yandong Wang, Chuanhui Zang, Peng Cheng in BMC Genomics (2024)

  2. Article

    Open Access

    Functional and evolutionary comparative analysis of the DIR gene family in Nicotiana tabacum L. and Solanum tuberosum L.

    The dirigent (DIR) genes encode proteins that act as crucial regulators of plant lignin biosynthesis. In Solanaceae species, members of the DIR gene family are intricately related to plant growth and development,...

    Tong Li, Wenbin Luo, Chaofan Du, **aolu Lin, Guojian Lin, Rui Chen in BMC Genomics (2024)

  3. Article

    Open Access

    The chloroplast genome of Chrozophora sabulosa Kar. & Kir. and its exploration in the evolutionary position uncertainty of genus Chrozophora

    Chrozophora sabulosa Kar. & Kir. is a biennial herbaceous plant that belongs to the Euphorbiaceae family and has medicinal properties. This research aimed to identify the genetic characteristics and phylogenetic ...

    Nida Javaid, Musarrat Ramzan, Shagufta Jabeen, Yanjun Du, Muhammad Anwar in BMC Genomics (2024)

  4. Article

    Open Access

    Identification of genes associated with sperm storage capacity in hens at different times after insemination by RNA-seq and Ribo-seq

    Sperm storage capacity (SSC) determines the duration of fertility in hens and is an important reproduction trait that cannot be ignored in production. Currently, the genetic mechanism of SSC is still unclear in h...

    Ruitang Chai, Cong **ao, Zhuliang Yang, Wenya Du, Ke Lv, Jiayi Zhang in BMC Genomics (2024)

  5. Article

    Open Access

    Genome-wide identification and phylogenetic and expression pattern analyses of EPF/EPFL family genes in the Rye (Secale cereale L.)

    Rye (Secale cereale L.) is one of the major cereal crop species in the Triticeae family and is known to be most tolerant to diverse abiotic stresses, such as cold, heat, osmotic, and salt stress. The EPIDERMAL PA...

    Lin Zhiling, Du Wenhua, Zhao Fangyuan in BMC Genomics (2024)

  6. Article

    Open Access

    Differential gene expression and immune cell infiltration in maedi-visna virus-infected lung tissues

    Maedi-visna virus (MVV) is a lentivirus that infects monocyte/macrophage lineage cells in sheep, goats, and wild ruminants and causes pneumonia, mastitis, arthritis, and encephalitis. The immune response to MV...

    **aona Shi, Yufei Zhang, Sixu Chen, **aoyue Du, Pei Zhang, Xujie Duan in BMC Genomics (2024)

  7. Article

    Open Access

    Dietary resveratrol improves the flesh quality of Siberian sturgeon (Acipenser baerii) by enhancing myofiber growth, nutrient accumulation and antioxidant capacity

    In aquaculture, sturgeons are generally maintained in the confined spaces, which not only hinders sturgeon movement, but also threatens their flesh quality that seriously concerned by aquaculture industry. As ...

    Shiyong Yang, Jia** Zhang, Zihan Xu, Wuyuntana Shao, **aojian Pang in BMC Genomics (2024)

  8. Article

    Open Access

    The Carthamus tinctorius L. genome sequence provides insights into synthesis of unsaturated fatty acids

    Domesticated safflower (Carthamus tinctorius L.) is a widely cultivated edible oil crop. However, despite its economic importance, the genetic basis underlying key traits such as oil content, resistance to biotic...

    Yuanyuan Dong, **aojie Wang, Naveed Ahmad, Yepeng Sun, Yuanxin Wang in BMC Genomics (2024)

  9. Article

    Open Access

    Investigating the causal relationship of gut microbiota with GERD and BE: a bidirectional mendelian randomization

    Gut microbiota(GM) have been proven associated with lots of gastrointestinal diseases, but its causal relationship with Gastroesophageal reflux disease(GERD) and Barrett’s esophagus(BE) hasn’t been explored. W...

    Yuan Liu, Jiali Yu, Yuxiao Yang, Bingyu Han, Qiao Wang, Shiyu Du in BMC Genomics (2024)

  10. Article

    Open Access

    Development and verification of a 10K liquid chip for Hainan black goat based on genoty** by pinpoint sequencing of liquid captured targets

    China has thousands years of goat breeding and abundant goat genetic resources. Additionally, the Hainan black goat is one of the high-quality local goat breeds in China. In order to conserve the germplasm res...

    Yong Meng, Wencan Zhang, Yiwen Cheng, Yanru Wu, Haotian Wu, Meirong He in BMC Genomic Data (2024)

  11. Article

    Open Access

    Solanum aculeatissimum and Solanum torvum chloroplast genome sequences: a comparative analysis with other Solanum chloroplast genomes

    Solanum aculeatissimum and Solanum torvum belong to the Solanum species, and they are essential plants known for their high resistance to diseases and adverse conditions. They are frequently used as rootstocks fo...

    Longhao Zhang, Chengqi Yi, **n **a, Zheng Jiang, Lihui Du, Shixin Yang in BMC Genomics (2024)

  12. Article

    Open Access

    Cotyledonary somatic embryo is one kind of intermediate material similar to callus in the process of in vitro tissue culture from Rosa hybrida ‘John F. Kennedy’

    Rose is recognized as an important ornamental plant worldwide, and it is also one of the most widely used flowers in gardens. At present, the improvement of rose traits is still difficult and uncertain, and mo...

    Li Du, **aoling Kang, Haoran Guo, Zhongfeng Zhu, Rui Wu, Mei**g Yuan in BMC Genomics (2024)

  13. Article

    Open Access

    Correction: Transcriptomics and metabolomics of blood, urine and ovarian follicular fuid of yak at induced estrus stage

    Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu in BMC Genomics (2024)

  14. Article

    Open Access

    Genomic evidence for human-mediated introgressive hybridization and selection in the developed breed

    The pig (Sus Scrofa) is one of the oldest domesticated livestock species that has undergone extensive improvement through modern breeding. European breeds have advantages in lean meat development and highly-produ...

    Heng Du, Zhen Liu, Shi-Yu Lu, Li Jiang, Lei Zhou, Jian-Feng Liu in BMC Genomics (2024)

  15. Article

    Open Access

    Transcriptomics and metabolomics of blood, urine and ovarian follicular fluid of yak at induced estrus stage

    To gain a deeper understanding of the metabolic differences within and outside the body, as well as changes in transcription levels following estrus in yaks, we conducted transcriptome and metabolome analyses ...

    Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu in BMC Genomics (2024)

  16. Article

    Open Access

    A semi-supervised approach for the integration of multi-omics data based on transformer multi-head self-attention mechanism and graph convolutional networks

    Comprehensive analysis of multi-omics data is crucial for accurately formulating effective treatment plans for complex diseases. Supervised ensemble methods have gained popularity in recent years for multi-omi...

    Jiahui Wang, Nanqing Liao, **aofei Du, Qingfeng Chen, Bizhong Wei in BMC Genomics (2024)

  17. Article

    Open Access

    Genome-wide identification and expression analysis of the ADH gene family under diverse stresses in tobacco (Nicotiana tabacum L.)

    Alcohol dehydrogenases (ADHs) are the crucial enzymes that can convert ethanol into acetaldehyde. In tobacco, members of ADH gene family are involved in various stresses tolerance reactions, lipid metabolism a...

    Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, **aolu Lin, Chengliang Chen in BMC Genomics (2024)

  18. Article

    Open Access

    Transcriptome and histological analyses on the uterus of freckle egg laying hens

    In this study, we explored the characteristics and causes of freckle formation. We collected 15 normal and freckled eggs each for eggshell index testing and hypothesized that the structure and function of the ...

    Guochao Duan, Wei Liu, Haixia Han, Dapeng Li, Qiuxia Lei, Yan Zhou, Jie Liu in BMC Genomics (2023)

  19. Article

    Open Access

    Assembly and analysis of the complete mitochondrial genome of Forsythia suspensa (Thunb.) Vahl

    Forsythia suspensa (Thunb.) Vahl is a valuable ornamental and medicinal plant. Although the nuclear and chloroplast genomes of F. suspensa have been published, its complete mitochondrial genome sequence has yet t...

    Yun Song, **aorong Du, Aoxuan Li, Amei Fan, Longjiao He, Zhe Sun in BMC Genomics (2023)

  20. Article

    Open Access

    Whole-genome sequencing revealed genetic diversity, structure and patterns of selection in Guizhou indigenous chickens

    The eight phenotypically distinguishable indigenous chicken breeds in Guizhou province of China are great resources for high-quality development of the poultry industry in China. However, their full value and ...

    Dan Xu, Wei Zhu, Youhao Wu, Shuo Wei, Gang Shu, Yaofu Tian, **aohui Du in BMC Genomics (2023)

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