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  1. No Access

    Article

    Continuum and Stochastic Modeling on the Role of Gel Microstructure in Zeolite Crystallization

    Continuum and stochastic mathematical models are introduced describing zeolite nucleation and crystal growth from precursor gels. Model predictions are in agreement with existing experimental results. For exam...

    Michael Tsapatsis, Dionisios G. Vlachos in MRS Online Proceedings Library (1996)

  2. No Access

    Article

    Mesoscopic modeling of binary diffusion through microporous zeolite membranes

    The mesoscopic framework describing single-component diffusion through microporous materials is extended here to characterize binary diffusion in the absence of intermolecular forces. Two diffusion mechanisms,...

    Mark A. Snyder, Dionisios G. Vlachos in MRS Online Proceedings Library (2003)

  3. No Access

    Chapter and Conference Paper

    Mesoscopic Modeling of Surface Processes

    In this paper we discuss mesoscopic models describing a broad class of pattern formation mechanisms, focusing on a prototypical system of surface processes. These models are in principle stochastic integrodiff...

    Markos A. Katsoulakis, Dionisios G. Vlachos in Dispersive Transport Equations and Multisc… (2004)

  4. No Access

    Chapter

    Mathematical Strategies for the Coarse-Graining of Microscopic Models

    Spatial inhomogeneity at some small length scale is the rule rather than the exception in most physicochemical processes ranging from advanced materials’ synthesis, to catalysis, to self-assembly, to atmospher...

    Markos A. Katsoulakis, Dionisios G. Vlachos in Handbook of Materials Modeling (2005)

  5. Article

    Open Access

    Computational modeling reveals molecular details of epidermal growth factor binding

    The ErbB family of receptors are dysregulated in a number of cancers, and the signaling pathway of this receptor family is a critical target for several anti-cancer drugs. Therefore a detailed understanding of...

    Kapil Mayawala, Dionisios G Vlachos, Jeremy S Edwards in BMC Cell Biology (2005)

  6. Article

    Open Access

    A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks

    The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such evidence, it is important that intracellula...

    Asawari Samant, Babatunde A Ogunnaike, Dionisios G Vlachos in BMC Bioinformatics (2007)

  7. No Access

    Article

    An overview of spatial microscopic and accelerated kinetic Monte Carlo methods

    The microscopic spatial kinetic Monte Carlo (KMC) method has been employed extensively in materials modeling. In this review paper, we focus on different traditional and multiscale KMC algorithms, challenges a...

    Abhijit Chatterjee, Dionisios G. Vlachos in Journal of Computer-Aided Materials Design (2007)

  8. No Access

    Article

    Dominant Reaction Pathways in the Catalytic Partial Oxidation of CH4 on Rh

    Reforming technologies are at the heart of converting fossil fuels and biofuels to syngas and hydrogen for novel energy applications and, among reforming technologies, catalytic partial oxidation is appealing ...

    Matteo Maestri, Dionisios G. Vlachos, Alessandra Beretta in Topics in Catalysis (2009)

  9. Article

    Open Access

    Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes

    An adaptive coarse-grained (kinetic) Monte Carlo (ACGMC) simulation framework is applied to reaction and diffusion dynamics in inhomogeneous domains. The presented model is relevant to the diffusion and dimeri...

    Stuart Collins, Michail Stamatakis, Dionisios G Vlachos in BMC Bioinformatics (2010)

  10. No Access

    Article

    Using first principles to predict bimetallic catalysts for the ammonia decomposition reaction

    The facile decomposition of ammonia to produce hydrogen is critical to its use as a hydrogen storage medium in a hydrogen economy, and although ruthenium shows good activity for catalysing this process, its ex...

    Danielle A. Hansgen, Dionisios G. Vlachos, **gguang G. Chen in Nature Chemistry (2010)

  11. No Access

    Article

    Catalysis Center for Energy Innovation for Biomass Processing: Research Strategies and Goals

    Production of energy and chemicals from biomass is of critical importance in meeting some of the challenges associated with decreasing availability of fossil fuels and addressing global climate change. In the ...

    Dionisios G. Vlachos, **gguang G. Chen, Raymond J. Gorte in Catalysis Letters (2010)

  12. No Access

    Article

    Computational-based catalyst design for thermochemical transformations

    Future energy production and storage in the chemical and refinery industries, stationary power generation, and transportation sectors will employ a diverse suite of technologies, including renewables, such as ...

    Giannis Mpourmpakis, Dionisios G. Vlachos in MRS Bulletin (2011)

  13. Article

    Open Access

    Parametric sensitivity analysis for biochemical reaction networks based on pathwise information theory

    Stochastic modeling and simulation provide powerful predictive methods for the intrinsic understanding of fundamental mechanisms in complex biochemical networks. Typically, such mathematical models involve net...

    Yannis Pantazis, Markos A Katsoulakis, Dionisios G Vlachos in BMC Bioinformatics (2013)

  14. No Access

    Article

    Comparison of Ethylene Glycol Steam Reforming Over Pt and NiPt Catalysts on Various Supports

    Steam reforming of ethylene glycol (EG) was studied on Pt and NiPt catalysts supported on γ-Al2O3, TiO2, and carbon. On all supports bimetallic NiPt catalysts show higher activity for H2 production than the corre...

    Sarah A. Tupy, **gguang G. Chen, Dionisios G. Vlachos in Topics in Catalysis (2013)

  15. Article

    Open Access

    Patched bimetallic surfaces are active catalysts for ammonia decomposition

    Ammonia decomposition is often used as an archetypical reaction for predicting new catalytic materials and understanding the very reason of why some reactions are sensitive on material’s structure. Core–shell ...

    Wei Guo, Dionisios G. Vlachos in Nature Communications (2015)

  16. Article

    Open Access

    Nickel supported on nitrogen-doped carbon nanotubes as hydrogen oxidation reaction catalyst in alkaline electrolyte

    The development of a low-cost, high-performance platinum-group-metal-free hydroxide exchange membrane fuel cell is hindered by the lack of a hydrogen oxidation reaction catalyst at the anode. Here we report th...

    Zhongbin Zhuang, Stephen A. Giles, Jie Zheng, Glen R. Jenness in Nature Communications (2016)

  17. No Access

    Article

    Effects of correlated parameters and uncertainty in electronic-structure-based chemical kinetic modelling

    Kinetic models based on first principles are becoming common place in heterogeneous catalysis because of their ability to interpret experimental data, identify the rate-controlling step, guide experiments and ...

    Jonathan E. Sutton, Wei Guo, Markos A. Katsoulakis in Nature Chemistry (2016)

  18. Article

    Open Access

    Durable and self-hydrating tungsten carbide-based composite polymer electrolyte membrane fuel cells

    Proton conductivity of the polymer electrolyte membranes in fuel cells dictates their performance and requires sufficient water management. Here, we report a simple, scalable method to produce well-dispersed t...

    Weiqing Zheng, Liang Wang, Fei Deng, Stephen A. Giles in Nature Communications (2017)

  19. Article

    Open Access

    Scaling relationships and theory for vibrational frequencies of adsorbates on transition metal surfaces

    Adsorbate vibrational excitations are an important fingerprint of molecule/surface interactions, affecting temperature contributions to the free energy and impacting reaction rate and equilibrium constants. Fu...

    Joshua L. Lansford, Alexander V. Mironenko, Dionisios G. Vlachos in Nature Communications (2017)

  20. No Access

    Living Reference Work Entry In depth

    Microkinetic Modeling of Surface Catalysis

    Microkinetic modeling (MKM) breaks down a reaction mechanism into all known elementary steps making no a priori assumptions about dominant reaction paths, rate determining steps, and most abundant reactive int...

    Gerhard R. Wittreich, Konstantinos Alexopoulos in Handbook of Materials Modeling

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