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  1. Article

    Open Access

    Domain generalization enables general cancer cell annotation in single-cell and spatial transcriptomics

    Single-cell and spatial transcriptome sequencing, two recently optimized transcriptome sequencing methods, are increasingly used to study cancer and related diseases. Cell annotation, particularly for malignan...

    Zhixing Zhong, Junchen Hou, Zhixian Yao, Lei Dong, Feng Liu in Nature Communications (2024)

  2. Article

    Open Access

    Capturing nascent extracellular vesicles by metabolic glycan labeling-assisted microfluidics

    Extracellular vesicle (EV) secretion is a dynamic process crucial to cellular communication. Temporally sorting EVs, i.e., separating the newly-produced ones from the pre-existing, can allow not only deep unde...

    Qiuyue Wu, Wencheng Wang, Chi Zhang, Zhenlong You, Yinyan Zeng in Nature Communications (2023)

  3. Article

    Open Access

    An innovative ensemble model based on deep learning for predicting COVID-19 infection

    Nowadays, global public health crises are occurring more frequently, and accurate prediction of these diseases can reduce the burden on the healthcare system. Taking COVID-19 as an example, accurate prediction...

    **aoying Su, Yanfeng Sun, Hongxi Liu, Qiuling Lang, Yichen Zhang in Scientific Reports (2023)

  4. Article

    Open Access

    Well-TEMP-seq as a microwell-based strategy for massively parallel profiling of single-cell temporal RNA dynamics

    Single-cell RNA sequencing (scRNA-seq) reveals the transcriptional heterogeneity of cells, but the static snapshots fail to reveal the time-resolved dynamics of transcription. Herein, we develop Well-TEMP-seq,...

    Shichao Lin, Kun Yin, Yingkun Zhang, Fanghe Lin, **aoyong Chen in Nature Communications (2023)

  5. Article

    Open Access

    Deep transfer learning enables lesion tracing of circulating tumor cells

    Liquid biopsy offers great promise for noninvasive cancer diagnostics, while the lack of adequate target characterization and analysis hinders its wide application. Single-cell RNA sequencing (scRNA-seq) is a ...

    **aoxu Guo, Fanghe Lin, Chuanyou Yi, Juan Song, Di Sun, Li Lin in Nature Communications (2022)

  6. Article

    Open Access

    Suppressing high-dimensional crystallographic defects for ultra-scaled DNA arrays

    While DNA-directed nano-fabrication enables the high-resolution patterning for conventional electronic materials and devices, the intrinsic self-assembly defects of DNA structures present challenges for furthe...

    Yahong Chen, Chaoyong Yang, Zhi Zhu, Wei Sun in Nature Communications (2022)

  7. Article

    Open Access

    The effect of levosimendan on right ventricular function in patients with heart dysfunction: a systematic review and meta-analysis

    Levosimendan exerts positive inotropic and vasodilatory effects. Currently, its effects on right heart function remain uncertain. This systematic review and meta-analysis is intended to illustrate the impacts ...

    Yaoshi Hu, Zhe Wei, Chaoyong Zhang, Chuanghong Lu, Zhiyu Zeng in Scientific Reports (2021)

  8. Article

    Open Access

    3D-printed integrative probeheads for magnetic resonance

    Magnetic resonance (MR) technology has been widely employed in scientific research, clinical diagnosis and geological survey. However, the fabrication of MR radio frequency probeheads still face difficulties i...

    Junyao **e, Xueqiu You, Yuqing Huang, Zurong Ni, **nchang Wang in Nature Communications (2020)

  9. Article

    Open Access

    Highly parallel and efficient single cell mRNA sequencing with paired picoliter chambers

    ScRNA-seq has the ability to reveal accurate and precise cell types and states. Existing scRNA-seq platforms utilize bead-based technologies uniquely barcoding individual cells, facing practical challenges for...

    Mingxia Zhang, Yuan Zou, **ng Xu, Xuebing Zhang, Mingxuan Gao in Nature Communications (2020)

  10. Article

    Open Access

    Assessing the viability of transplanted gut microbiota by sequential tagging with D-amino acid-based metabolic probes

    Currently, there are more than 200 fecal microbiota transplantation (FMT) clinical trials worldwide. However, our knowledge of this microbial therapy is still limited. Here we develop a strategy using sequenti...

    Wei Wang, Liyuan Lin, Yahui Du, Yanling Song, **aoman Peng in Nature Communications (2019)

  11. Article

    Open Access

    Control of capillary behavior through target-responsive hydrogel permeability alteration for sensitive visual quantitative detection

    DNA hydrogels have received considerable attention in analytical science, however, some limitations still exist in the applications of intelligent hydrogels. In this paper, we describe a way to prepare gel fil...

    Yansheng Li, Yanli Ma, **angyu Jiao, Tingyu Li, Zhehao Lv in Nature Communications (2019)

  12. Article

    Open Access

    Optimization of the co-digestion of sewage sludge, maize straw and cow manure: microbial responses and effect of fractional organic characteristics

    The aim of this study was to evaluate the efficiency and optimization of co-digestion using sewage sludge (SS), maize straw (MS) and cow manure (CM) as feeds, and the effects of the mixing ratio and C/N ratio ...

    Liangliang Wei, Kena Qin, **g Ding, Mao Xue, Chaoyong Yang in Scientific Reports (2019)

  13. Article

    Open Access

    Evaluation of the Heshang Cave stalagmite calcium isotope composition as a paleohydrologic proxy by comparison with the instrumental precipitation record

    With their merits of precise dating and sensitivity to climate changes, laminated stalagmites are an important terrestrial archive for reconstructions of paleohydrological changes. In particular, the Ca isotop...

    **uli Li, Xue** Cui, Dong He, ** Liao, Chaoyong Hu in Scientific Reports (2018)

  14. Article

    Open Access

    Quantum dot-like excitonic behavior in individual single walled-carbon nanotubes

    Semiconducting single-walled carbon nanotubes are one-dimensional materials with great prospects for applications such as optoelectronic and quantum information devices. Yet, their optical performance is hinde...

    Xu Wang, Jack A. Alexander-Webber, Wei Jia, Benjamin P. L. Reid in Scientific Reports (2016)

  15. Article

    Open Access

    Using aptamers to elucidate esophageal cancer clinical samples

    The epithelial cell adhesion molecule (EpCAM) is closely correlated with the occurrence and development of various cancers of epithelial origin. This study tested, for the first time, the ability of EpCAM apta...

    Zhenxu Liu, Yi Lu, Ying Pu, Jun Liu, Bo Liu, Bo Yu, Ke Chen, Ting Fu in Scientific Reports (2015)

  16. Article

    Open Access

    Mast Cells Participate in Corneal Development in Mice

    The development of the cornea, a highly specialized transparent tissue located at the anterior of the eye, is coordinated by a variety of molecules and cells. Here, we report that mast cells (MCs), recently fo...

    Jun Liu, Ting Fu, Fang Song, Yunxia Xue, Chaoyong **a, Peng Liu in Scientific Reports (2015)

  17. No Access

    Article

    PDGFRβ signalling regulates local inflammation and synergizes with hypercholesterolaemia to promote atherosclerosis

    Platelet-derived growth factor (PDGF) is a mitogen and chemoattractant for vascular smooth muscle cells (VSMCs). However, the direct effects of PDGF receptor β (PDGFRβ) activation on VSMCs have not been studie...

    Chaoyong He, Shayna C. Medley, Taishan Hu, Myron E. Hinsdale in Nature Communications (2015)

  18. Article

    Open Access

    A Controllable Aptamer-Based Self-Assembled DNA Dendrimer for High Affinity Targeting, Bioimaging and Drug Delivery

    Targeted drug delivery is important in cancer therapy to decrease the systemic toxicity resulting from nonspecific drug distribution and to enhance drug delivery efficiency. We have developed an aptamer-based ...

    Huimin Zhang, Yanli Ma, Yi **e, Yuan An, Yishun Huang, Zhi Zhu in Scientific Reports (2015)

  19. Article

    Open Access

    MicroRNA-33b Inhibits Breast Cancer Metastasis by Targeting HMGA2, SALL4 and Twist1

    MicroRNAs are a class of small noncoding RNAs that regulate gene expression post-transcriptionally either by inhibiting protein translation or by causing the degradation of target mRNAs. Current evidence indic...

    Yancheng Lin, Allan Yi Liu, Chuannan Fan, Hong Zheng, Yuan Li in Scientific Reports (2015)

  20. Article

    Retraction Note to: Early magnitude estimation for the MW7.9 Wenchuan earthquake using progressively expanded P-wave time window

    More and more earthquake early warning systems (EEWS) are developed or currently being tested in many active seismic regions of the world. A well-known problem with real-time procedures is the parameter satura...

    Chaoyong Peng, Jiansi Yang, Yu Zheng, Zhiqiang Xu, Xudong Jiang in Scientific Reports (2015)

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