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  1. Article

    Open Access

    A cost-effective approach to measurements of fluorophore temperature sensitivity and temperature change with reasonable accuracy

    The demand for measuring fluorophore temperature sensitivity and temperature change in chemical or biological samples has spurred the search for effective methods. While infrared (IR) light-based thermal devic...

    Matthew Cai, Alexander Sun, Andrea Yan, Zachary Ding in Scientific Reports (2024)

  2. Article

    Open Access

    A protein kinase C α and β inhibitor blunts hyperphagia to halt renal function decline and reduces adiposity in a rat model of obesity-driven type 2 diabetes

    Type 2 diabetes (T2D) and its complications can have debilitating, sometimes fatal consequences for afflicted individuals. The disease can be difficult to control, and therapeutic strategies to prevent T2D-ind...

    Ju Wang, Agustin Casimiro-Garcia, Bryce G. Johnson, Jennifer Duffen in Scientific Reports (2023)

  3. Article

    Open Access

    Parsing altered gray matter morphology of depression using a framework integrating the normative model and non-negative matrix factorization

    The high inter-individual heterogeneity in individuals with depression limits neuroimaging studies with case-control approaches to identify promising biomarkers for individualized clinical decision-making. We ...

    Shaoqiang Han, Qian Cui, Rui** Zheng, Shuying Li, Bingqian Zhou in Nature Communications (2023)

  4. Article

    Open Access

    Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry

    Single-cell RNA sequencing (scRNA-seq) has revolutionized our understanding of cellular heterogeneity in health and disease. However, the lack of physical relationships among dissociated cells has limited its ...

    Qihuang Zhang, Shunzhou Jiang, Amelia Schroeder, Jian Hu, Kejie Li in Nature Communications (2023)

  5. Article

    Open Access

    Characterizing the composition of iPSC derived cells from bulk transcriptomics data with CellMap

    Induced pluripotent stem cell (iPSC) derived cell types are increasingly employed as in vitro model systems for drug discovery. For these studies to be meaningful, it is important to understand the reproducibi...

    Zhengyu Ouyang, Nathanael Bourgeois-Tchir, Eugenia Lyashenko in Scientific Reports (2022)

  6. Article

    Open Access

    TGFβ reprograms TNF stimulation of macrophages towards a non-canonical pathway driving inflammatory osteoclastogenesis

    It is well-established that receptor activator of NF-κB ligand (RANKL) is the inducer of physiological osteoclast differentiation. However, the specific drivers and mechanisms driving inflammatory osteoclast d...

    Yuhan **a, Kazuki Inoue, Yong Du, Stacey J. Baker in Nature Communications (2022)

  7. Article

    Open Access

    Anti-pulling force and displacement deformation analysis of the anchor pulling system of the new debris flow grille dam

    To avoid waste from a large section space structure layout and deep burial, improve the structural strength and stability. Anchor technology is introduced, and combined with the advantages of the supporting wa...

    Yongsheng Wang, Baohong Lv, Jianshe Liu, **aobin Zhang in Scientific Reports (2022)

  8. Article

    Open Access

    Animal model of intrahepatic metastasis of hepatocellular carcinoma: establishment and characteristic

    One of the most important and striking characteristics of hepatocellular carcinoma (HCC) with intrahepatic metastasis, is that it results in extremely poor prognosis. Animal models have become a fundamental an...

    Xuemei Li, Jike Hu, Baohong Gu, Maswikiti Ewetse Paul, Bofang Wang in Scientific Reports (2020)

  9. Article

    Open Access

    An ICCD camera-based time-domain ultrasound-switchable fluorescence imaging system

    Fluorescence imaging in centimeter-deep tissues with high resolution is highly desirable for many biomedical applications. Recently, we have developed a new imaging modality, ultrasound-switchable fluorescence...

    Shuai Yu, Tingfeng Yao, Baohong Yuan in Scientific Reports (2019)

  10. Article

    Open Access

    In vivo ultrasound-switchable fluorescence imaging

    The conventional fluorescence imaging has limited spatial resolution in centimeter-deep tissue because of the tissue’s high scattering property. Ultrasound-switchable fluorescence (USF) imaging, a new imaging ...

    Tingfeng Yao, Shuai Yu, Yang Liu, Baohong Yuan in Scientific Reports (2019)

  11. Article

    Open Access

    G-protein Gα13 functions as a cytoskeletal and mitochondrial regulator to restrain osteoclast function

    Excessive osteoclastic bone erosion disrupts normal bone remodeling and leads to bone loss in many skeletal diseases, including inflammatory arthritis, such as rheumatoid arthritis (RA) and psoriatic arthritis...

    Shinichi Nakano, Kazuki Inoue, Cheng Xu, Zhonghao Deng in Scientific Reports (2019)

  12. Article

    Open Access

    Bone protection by inhibition of microRNA-182

    Targeting microRNAs recently shows significant therapeutic promise; however, such progress is underdeveloped in treatment of skeletal diseases with osteolysis, such as osteoporosis and rheumatoid arthritis (RA...

    Kazuki Inoue, Zhonghao Deng, Yufan Chen, Eugenia Giannopoulou in Nature Communications (2018)

  13. Article

    Open Access

    Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species

    Long terminal repeat (LTR) retrotransposon is the most abundant DNA component and is largely responsible for plant genome size variation. Although it has been studied in plant species, very limited data is ava...

    Zhen Liu, Yuling Liu, Fang Liu, Shulin Zhang, **ngxing Wang in Scientific Reports (2018)

  14. Article

    Open Access

    Computational identification and validation of alternative splicing in ZSF1 rat RNA-seq data, a preclinical model for type 2 diabetic nephropathy

    Obese ZSF1 rats exhibit spontaneous time-dependent diabetic nephropathy and are considered to be a highly relevant animal model of progressive human diabetic kidney disease. We previously identified gene expre...

    Chi Zhang, Ken Dower, Baohong Zhang, Robert V. Martinez, Lih-Ling Lin in Scientific Reports (2018)

  15. Article

    Open Access

    Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

    To allow efficient transcript/gene detection, highly abundant ribosomal RNAs (rRNA) are generally removed from total RNA either by positive polyA+ selection or by rRNA depletion (negative selection) before seq...

    Shanrong Zhao, Ying Zhang, Ramya Gamini, Baohong Zhang in Scientific Reports (2018)

  16. Article

    Open Access

    Dissection and function of autoimmunity-associated TNFAIP3 (A20) gene enhancers in humanized mouse models

    Enhancers regulate gene expression and have been linked with disease pathogenesis. Little is known about enhancers that regulate human disease-associated genes in primary cells relevant for pathogenesis. Here ...

    Upneet K. Sokhi, Mark P. Liber, Laura Frye, Sungho Park in Nature Communications (2018)

  17. Article

    Open Access

    Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton

    Plant specific transcription factors, SQUAMOSA promoter-binding protein-like (SPL), are involved in many biological processes. However, no systematical study has been reported in cotton. In this study, a total...

    Cai** Cai, Wangzhen Guo, Baohong Zhang in Scientific Reports (2018)

  18. Article

    Open Access

    A novel Tn1696-like composite transposon (Tn6404) harboring bla IMP-4 in a Klebsiella pneumoniae isolate carrying a rare ESBL gene bla SFO-1

    Genetic determinants of a clinical Klebsiella pneumoniae isolate (KP1814) coproducing IMP-4 and a rare ESBL gene SFO-1 was investigated. KP1814 belongs to a novel sequence type (ST) assigned to ST2270. WGS identi...

    Kai Zhou, Wei Yu, ** Shen, Haifeng Lu, Baohong Wang in Scientific Reports (2017)

  19. Article

    Open Access

    High throughput deep sequencing reveals the important roles of microRNAs during sweetpotato storage at chilling temperature

    Sweetpotato (Impomoea batatas L.) is a globally important economic food crop with a potential of becoming a bioenergy and pharmaceutical crop. Thus, studying the molecular mechanism of tuberous root development a...

    Zeyi **e, Aiming Wang, Hongmin Li, **g**g Yu, Jiaojiao Jiang in Scientific Reports (2017)

  20. Article

    Open Access

    Triclosan Disrupts SKN-1/Nrf2-Mediated Oxidative Stress Response in C. elegans and Human Mesenchymal Stem Cells

    Triclosan (TCS), an antimicrobial chemical with potential endocrine-disrupting properties, may pose a risk to early embryonic development and cellular homeostasis during adulthood. Here, we show that TCS induc...

    Dong Suk Yoon, Yoorim Choi, Dong Seok Cha, Peng Zhang, Seong Mi Choi in Scientific Reports (2017)

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