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  1. Article

    Open Access

    Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate Central Nervous System

    Because some of its CNS neurons (e.g., retinal ganglion cells after optic nerve crush (ONC)) regenerate axons throughout life, whereas others (e.g., hindbrain neurons after spinal cord injury (SCI)) lose this cap...

    Sergei Reverdatto, Aparna Prasad, Jamie L. Belrose, **ang Zhang in BMC Genomics (2022)

  2. Article

    Open Access

    Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

    The South African claw-toed frog, Xenopus laevis, is uniquely suited for studying differences between regenerative and non-regenerative responses to CNS injury within the same organism, because some CNS neurons (...

    Jamie L. Belrose, Aparna Prasad, Morgan A. Sammons, Kurt M. Gibbs in BMC Genomics (2020)

  3. Article

    Open Access

    Variant detection and the Autism sequencing project

    Orion Buske, Misko Dzamba, Justin Foong, Lynette Lau, Marc Fiume in BMC Bioinformatics (2011)

  4. No Access

    Article

    Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

    When embarking on a microarray-based study of genomic copy number variation, what's helpful for navigating the myriad of available array platforms and data analysis approaches? Pinto et al. evaluate six samples f...

    Dalila Pinto, Katayoon Darvishi, **nghua Shi, Diana Rajan in Nature Biotechnology (2011)

  5. Article

    Open Access

    A 2cM genome-wide scan of European Holstein cattle affected by classical BSE

    Classical bovine spongiform encephalopathy (BSE) is an acquired prion disease that is invariably fatal in cattle and has been implicated as a significant human health risk. Polymorphisms that alter the prion p...

    Brenda M Murdoch, Michael L Clawson, William W Laegreid, Paul Stothard in BMC Genetics (2010)

  6. Article

    Open Access

    A first generation whole genome RH map of the river buffalo with comparison to domestic cattle

    The recently constructed river buffalo whole-genome radiation hybrid panel (BBURH5000) has already been used to generate preliminary radiation hybrid (RH) maps for several chromosomes, and buffalo-bovine comparat...

    M Elisabete J Amaral, Jason R Grant, Penny K Riggs, Nedenia B Stafuzza in BMC Genomics (2008)

  7. Article

    Open Access

    High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly

    High resolution radiation hybrid (RH) maps can facilitate genome sequence assembly by correctly ordering genes and genetic markers along chromosomes. The objective of the present study was to generate high res...

    Aparna Prasad, Thomas Schiex, Stephanie McKay, Brenda Murdoch, Zhiquan Wang in BMC Genomics (2007)

  8. Article

    Open Access

    A second generation radiation hybrid map to aid the assembly of the bovine genome sequence

    Several approaches can be used to determine the order of loci on chromosomes and hence develop maps of the genome. However, all map** approaches are prone to errors either arising from technical deficiencies...

    Oliver C Jann, Jan Aerts, Michelle Jones, Nicola Hastings, Andy Law in BMC Genomics (2006)