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    Chapter and Conference Paper

    Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics

    The recently introduced Hybrid Automata Stochastic Logic (HASL) establishes a powerful framework for the analysis of a broad class of stochastic processes, namely Discrete Event Stochastic Processes (DESPs). H...

    Paolo Ballarini, Jarno Mäkelä, Andre S. Ribeiro in Computational Methods in Systems Biology (2012)

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    Chapter and Conference Paper

    Modelling Polar Retention of Complexes in Escherichia coli

    The cytoplasm of Escherichia coli is a crowded, heterogeneous environment. The spatial kinetics and heterogeneities of synthetic RNA-protein complexes have been recently studied using single-cell live imaging. A ...

    Abhishekh Gupta, Jason Lloyd-Price in Computational Methods in Systems Biology (2014)

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    Chapter and Conference Paper

    Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli

    Recent developments in live-cell time-lapse microscopy and signal processing methods for single-cell, single-RNA detection now allow characterizing the in vivo dynamics of RNA production of Escherichia coli promo...

    Samuel M. D. Oliveira, Mohamed N. M. Bahrudeen in Computational Methods in Systems Biology (2018)