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  1. Article

    Open Access

    A human gut bacterial genome and culture collection for improved metagenomic analyses

    Understanding gut microbiome functions requires cultivated bacteria for experimental validation and reference bacterial genome sequences to interpret metagenome datasets and guide functional analyses. We prese...

    Samuel C. Forster, Nitin Kumar, Blessing O. Anonye in Nature Biotechnology (2019)

  2. Article

    Open Access

    Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC

    Microbial eukaryotes constitute a significant fraction of biodiversity and have recently gained more attention, but the recovery of high-quality metagenomic assembled eukaryotic genomes is limited by the curre...

    Paul Saary, Alex L. Mitchell, Robert D. Finn in Genome Biology (2020)

  3. Article

    Open Access

    Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes

    Understanding the myriad pathways by which antimicrobial-resistance genes (ARGs) spread across biomes is necessary to counteract the global menace of antimicrobial resistance. We screened 17939 assembled metag...

    Qiang Lin, Basil Britto Xavier, Blaise T. F. Alako in Communications Biology (2022)