4 Result(s)
within
Abhinav Nellore
Human Genetics
Microbial Genetics and Genomics
-
Article
Open AccessCHANCE: comprehensive software for quality control and validation of ChIP-seq data
ChIP-seq is a powerful method for obtaining genome-wide maps of protein-DNA interactions and epigenetic modifications. CHANCE (CHip-seq ANalytics and Confidence Estimation) is a standalone package for ChIP-seq...
-
Article
Open AccessHuman splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
Gene annotations, such as those in GENCODE, are derived primarily from alignments of spliced cDNA sequences and protein sequences. The impact of RNA-seq data on annotation has been confined to major projects l...
-
Article
Open Accessrecount3: summaries and queries for large-scale RNA-seq expression and splicing
We present recount3, a resource consisting of over 750,000 publicly available human and mouse RNA sequencing (RNA-seq) samples uniformly processed by our new Monorail analysis pipeline. To facilitate access to th...
-
Article
Open AccessRetained introns in long RNA-seq reads are not reliably detected in sample-matched short reads
There is growing interest in retained introns in a variety of disease contexts including cancer and aging. Many software tools have been developed to detect retained introns from short RNA-seq reads, but relia...
