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Persistence and enrichment of dominant T cell clonotypes in expanded tumor-infiltrating lymphocytes of breast cancer

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  1. Article

    Open Access

    Author Correction: Inhibition of lysine acetyltransferase KAT6 in ER+HER2 metastatic breast cancer: a phase 1 trial

    Toru Mukohara, Yeon Hee Park, David Sommerhalder, Kan Yonemori in Nature Medicine (2024)

  2. Article

    Open Access

    Tumour-associated myeloid cells expressing IL-10R2/IL-22R1 as a potential biomarker for diagnosis and recurrence of pancreatic ductal adenocarcinoma

    Pancreatic ductal adenocarcinoma (PDAC) is an aggressive malignancy with a poor survival rate, largely due to the lack of early diagnosis. Although myeloid cells are crucial in the tumour microenvironment, whe...

    Hyung Keun Lee, So Young Kim, Soo-Hyun Chung, Bongkun Choi in British Journal of Cancer (2024)

  3. Article

    Open Access

    Inhibition of lysine acetyltransferase KAT6 in ER+HER2 metastatic breast cancer: a phase 1 trial

    Inhibition of histone lysine acetyltransferases (KATs) KAT6A and KAT6B has shown antitumor activity in estrogen receptor-positive (ER+) breast cancer preclinical models. PF-07248144 is a selective catalytic inhib...

    Toru Mukohara, Yeon Hee Park, David Sommerhalder, Kan Yonemori in Nature Medicine (2024)

  4. Article

    Open Access

    heredERA Breast Cancer: a phase III, randomized, open-label study evaluating the efficacy and safety of giredestrant plus the fixed-dose combination of pertuzumab and trastuzumab for subcutaneous injection in patients with previously untreated HER2-positive, estrogen receptor-positive locally advanced or metastatic breast cancer

    HER2-positive, estrogen receptor-positive breast cancer (HER2+, ER+ BC) is a distinct disease subtype associated with inferior response to chemotherapy plus HER2-targeted therapy compared with HER2+, ER-negati...

    Sherko Kuemmel, Catherine Harper-Wynne, Yeon Hee Park, Fábio Franke in BMC Cancer (2024)

  5. Article

    Open Access

    Real-world efficacy and safety of capecitabine with oxaliplatin in patients with advanced adenocarcinoma of the ampulla of Vater

    Adenocarcinoma of the ampulla of Vater (AoV) is one of the rare periampullary cancers, and due to its anatomical location, it is categorized into various histologic subtypes. Its rarity and diversity pose chal...

    Seunghwan Lee, Se Jun Park, Kabsoo Shin, Tae Ho Hong, In-Ho Kim, Myung Ah Lee in BMC Cancer (2024)

  6. Article

    Open Access

    Pragmatic nationwide master observational trial based on genomic alterations in advanced solid tumors: KOrean Precision Medicine Networking Group Study of MOlecular profiling guided therapy based on genomic alterations in advanced Solid tumors (KOSMOS)-II study protocol KCSG AL-22–09

    Next-generation sequencing (NGS) has been introduced to many Korean institutions to support molecular diagnostics in cancer since 2017, when it became eligible for reimbursement by the National Health Insuranc...

    Sun Young Kim, Jee Hyun Kim, Tae-Yong Kim, Sook Ryun Park, Shinkyo Yoon in BMC Cancer (2024)

  7. Article

    Open Access

    IC100, a humanized therapeutic monoclonal anti-ASC antibody alleviates oxygen-induced retinopathy in mice

    Retinopathy of prematurity (ROP), which often presents with bronchopulmonary dysplasia (BPD), is among the most common morbidities affecting extremely premature infants and is a leading cause of severe vision ...

    Huijun Yuan, Shaoyi Chen, Matthew R. Duncan, Juan Pablo de Rivero Vaccari in Angiogenesis (2024)

  8. Article

    Open Access

    Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns

    Whole chromosome and arm-level copy number alterations occur at high frequencies in tumors, but their selective advantages, if any, are poorly understood. Here, utilizing unbiased whole chromosome genetic scre...

    Emma V. Watson, Jake June-Koo Lee, Doga C. Gulhan, Giorgio E. M. Melloni in Nature Genetics (2024)

  9. Article

    Open Access

    Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes

    The extent of cell-to-cell variation in tumor mitochondrial DNA (mtDNA) copy number and genotype, and the phenotypic and evolutionary consequences of such variation, are poorly characterized. Here we use ampli...

    Minsoo Kim, Alexander N. Gorelick, Ignacio Vàzquez-García in Nature Genetics (2024)

  10. Article

    Open Access

    Integrated clinical and genomic models using machine-learning methods to predict the efficacy of paclitaxel-based chemotherapy in patients with advanced gastric cancer

    Paclitaxel is commonly used as a second-line therapy for advanced gastric cancer (AGC). The decision to proceed with second-line chemotherapy and select an appropriate regimen is critical for vulnerable patien...

    Yonghwa Choi, Jangwoo Lee, Keewon Shin, Ji Won Lee, Ju Won Kim, Soohyeon Lee in BMC Cancer (2024)

  11. Article

    Open Access

    Urinary microbiome-based metagenomic signature for the noninvasive diagnosis of hepatocellular carcinoma

    Gut microbial dysbiosis is implicated in chronic liver disease and hepatocellular carcinoma (HCC), but the role of microbiomes from various body sites remains unexplored. We assessed disease-specific alteratio...

    Eun Ju Cho, Boram Kim, Su Jong Yu, Suk Kyun Hong in British Journal of Cancer (2024)

  12. Article

    Open Access

    mFOLFIRINOX versus mFOLFOX 6 as adjuvant treatment for high-risk stage III colon cancer - the FROST trial: study protocol for a multicenter, randomized controlled, phase II trial

    High-risk stage III colon cancer has a considerably poorer prognosis than stage II and low-risk stage III colon cancers. Nevertheless, most guidelines recommend similar adjuvant treatment approaches for all th...

    Kyung-Ha Lee, In Jun Yang, Gi Won Ha, Jaeim Lee, Youn Young Park in BMC Cancer (2024)

  13. Article

    Open Access

    Transgelin-2, a novel cancer stem cell-related biomarker, is a diagnostic and therapeutic target for biliary tract cancer

    Biliary tract cancer (BTC) is a relatively rare but aggressive gastrointestinal cancer with a high mortality rate. Cancer stem cell (CSC) populations play crucial roles in tumor biology and are responsible for...

    Jung Hyun Jo, Soo Been Park, Joowon Chung, Taeyun Oh, Hee Seung Lee in BMC Cancer (2024)

  14. Article

    Open Access

    Accurate and sensitive mutational signature analysis with MuSiCal

    Mutational signature analysis is a recent computational approach for interpreting somatic mutations in the genome. Its application to cancer data has enhanced our understanding of mutational forces driving tum...

    Hu **, Doga C. Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng in Nature Genetics (2024)

  15. Article

    Open Access

    Phase 1 study of high-dose DFMO, celecoxib, cyclophosphamide and topotecan for patients with relapsed neuroblastoma: a New Approaches to Neuroblastoma Therapy trial

    MYC genes regulate ornithine decarboxylase (Odc) to increase intratumoral polyamines. We conducted a Phase I trial [NCT02030964] to determine the maximum tolerated dose (MTD) of DFMO, an Odc inhibitor, with celec...

    Michael D. Hogarty, David S. Ziegler, Andrea Franson in British Journal of Cancer (2024)

  16. Article

    Open Access

    Biomarker-directed targeted therapy plus durvalumab in advanced non-small-cell lung cancer: a phase 2 umbrella trial

    For patients with non-small-cell lung cancer (NSCLC) tumors without currently targetable molecular alterations, standard-of-care treatment is immunotherapy with anti-PD-(L)1 checkpoint inhibitors, alone or wit...

    Benjamin Besse, Elvire Pons-Tostivint, Keunchil Park, Sylvia Hartl in Nature Medicine (2024)

  17. Article

    Open Access

    Circulating tumor cells in early lobular versus ductal breast cancer and their associations with prognosis

    This is a secondary data analysis of the TIPPING study, which included 1,121 patients with stage I-III breast cancer who had enumeration of CTCs (by either CellSearch or immunomagnetic enrichment and flow cyto...

    Silver Alkhafaji, Denise M. Wolf, Mark Jesus M. Magbanua in npj Breast Cancer (2024)

  18. Article

    Open Access

    Real-world outcomes of third-line immune checkpoint inhibitors versus irinotecan-based chemotherapy in patients with advanced gastric cancer: a Korean, multicenter study (KCSG ST22-06)

    Immune checkpoint inhibitor (ICI) or irinotecan-based chemotherapy is frequently used after failure of second-line paclitaxel plus ramucirumab treatment for patients with locally advanced unresectable or metas...

    Sung Hee Lim, Keun-Wook Lee, Jae-Joon Kim, Hyeon-Su Im, In-Ho Kim in BMC Cancer (2024)

  19. Article

    Open Access

    Clinical implications of AR alterations in advanced prostate cancer: a multi-institutional collaboration

    AR gene alterations can develop in response to pressure of testosterone suppression and androgen receptor targeting agents (ARTA). Despite this, the relevance of these gene alterations in the context of ARTA tre....

    Zeynep B. Zengin, Nicholas C. Henderson in Prostate Cancer and Prostatic Diseases (2024)

  20. Article

    Open Access

    Comparison of partitioned survival modeling with state transition modeling approaches with or without consideration of brain metastasis: a case study of Osimertinib versus pemetrexed-platinum

    The partitioned survival model (PSM) and the state transition model (STM) are widely used in cost-effectiveness analyses of anticancer drugs. Using different modeling approaches with or without consideration o...

    Yoon-Bo Shim, Byeong-Chan Oh, Eui-Kyung Lee, Mi-Hai Park in BMC Cancer (2024)

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