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  1. Article

    Open Access

    The evolutionary history of the polyQ tract in huntingtin sheds light on its functional pro-neural activities

    Huntington’s disease is caused by a pathologically long (>35) CAG repeat located in the first exon of the Huntingtin gene (HTT). While pathologically expanded CAG repeats are the focus of extensive investigations...

    Raffaele Iennaco, Giulio Formenti, Camilla Trovesi in Cell Death & Differentiation (2022)

  2. Article

    Open Access

    MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks

    DNA methylation (DNAm) alterations have been heavily implicated in carcinogenesis and the pathophysiology of diseases through upstream regulation of gene expression. DNAm deep-learning approaches are able to c...

    Joshua J. Levy, Youdinghuan Chen in npj Systems Biology and Applications (2021)

  3. Article

    Open Access

    MethylNet: an automated and modular deep learning approach for DNA methylation analysis

    DNA methylation (DNAm) is an epigenetic regulator of gene expression programs that can be altered by environmental exposures, aging, and in pathogenesis. Traditional analyses that associate DNAm alterations wi...

    Joshua J. Levy, Alexander J. Titus, Curtis L. Petersen in BMC Bioinformatics (2020)

  4. No Access

    Article

    The Synergic Relationship Between Xylan Removal and Enhanced Cellulose Digestibility for Bioethanol Production: Reactive Area, Crystallinity, and Inhibitation

    Hemicellulosic fraction is thought to act as a barrier, preventing the access of cellulase to cellulose. The impact of xylan removal, by both of the chemical and biological processes, on the cellulose accessib...

    Haiyan Yang, **ghuan Chen, Qian Chen, Kun Wang, Run-Cang Sun in BioEnergy Research (2015)