1,214 Result(s)

Article

Comparative proteomics in tall fescue to reveal underlying mechanisms for improving Photosystem II thermotolerance during heat stress memory

The escalating impacts of global warming intensify the detrimental effects of heat stress on crop growth and yield. Among the earliest and most vulnerable sites of damage is Photosystem II (PSII). Plants expos...

Guangyang Wang, **ulei Wang, Dongli Li, Xuehe Yang, Tao Hu, **min Fu in BMC Genomics (2024)

Article

Genetic diversity and population structure of wheat landraces in Southern Winter Wheat Region of China

Wheat landraces are considered a valuable source of genetic diversity for breeding programs. It is useful to evaluate the genetic diversity in breeding studies such as marker-assisted selection (MAS), genome-w...

Ying Liu, Bisheng Fu, Qiaofeng Zhang, ** Cai, Wei Guo, Wenling Zhai… in BMC Genomics (2024)

Article

Genome-wide identification and molecular evolution of Dof transcription factors in Cyperus esculentus

Dof transcription factor family in Cyperus esculentus genome was identified and analyzed using bioinformatics. The analysis results revealed that C.esculentus genome contains 29 Dof genes (CesDof), all of which a...

Chun Fu, ZiHui Liao, Na Jiang, YaoJun Yang in BMC Genomics (2024)

Article

Integrated transcriptome and microRNA analysis reveals molecular responses to high-temperature stress in the liver of American shad (Alosa sapidissima)

Fish reproduction, development and growth are directly affected by temperature, investigating the regulatory mechanisms behind high temperature stress is helpful to construct a finer molecular network. In this...

Ying Liu, Zhengyuan Liang, Yulin Li, Wenbin Zhu, Bingbing Feng, Wei Xu… in BMC Genomics (2024)

Article

Identification and expression analysis of Sox family genes in echinoderms

The Sox gene family, a collection of transcription factors widely distributed throughout the animal kingdom, plays a crucial role in numerous developmental processes. Echinoderms occupy a pivotal position in many...

**ao**g Li, Tiangui Cao, Hui Liu, Longhai Fu, Quanchao Wang in BMC Genomics (2024)

Article

scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis

Spatial transcriptomics has transformed our ability to study tissue complexity. However, it remains challenging to accurately dissect tissue organization at single-cell resolution. Here we introduce scHolograp...

Yuheng C. Fu, Arpan Das, Dongmei Wang, Rosemary Braun, Rui Yi in Genome Biology (2024)

Article

Susceptibility gene identification and risk evaluation model construction by transcriptome-wide association analysis for salt sensitivity of blood pressure

Salt sensitivity of blood pressure (SSBP) is an intermediate phenotype of hypertension and is a predictor of long-term cardiovascular events and death. However, the genetic structures of SSBP are uncertain, an...

Han Qi, Yun-Yi **e, **ao-Jun Yang, Juan **a, Kuo Liu, Feng-Xu Zhang… in BMC Genomics (2024)

Article

Unveiling biosynthetic potential of an Arctic marine-derived strain Aspergillus sydowii MNP-2

A growing number of studies have demonstrated that the polar regions have the potential to be a significant repository of microbial resources and a potential source of active ingredients. Genome mining strateg...

Zhiyang Fu, **angzhou Gong, Zhe Hu, Bin Wei, Huawei Zhang in BMC Genomics (2024)

Article

Salinity-responsive histone PTMs identified in the gills and gonads of Mozambique tilapia (Oreochromis mossambicus)

Histone post-translational modifications (PTMs) are epigenetic marks that can be induced by environmental stress and elicit heritable patterns of gene expression. To investigate this process in an ecological c...

Elizabeth A. Mojica, Yuhan Fu, Dietmar Kültz in BMC Genomics (2024)

Article

Identification of Key Genes and Pathways for Anaerobic Germination Tolerance in Rice Using Weighted Gene Co-Expression Network Analysis (WGCNA) in Association with Quantitative Trait Locus (QTL) Map**

Rice is one of the most important food crops in the world, and with the development of direct seeding methods for rice, exposure to anaerobic stress has become a major factor limiting its growth.

Ming Yin, Zhenzhen Zheng, Yue Zhang, Shanwen Wang, Liying Zuo, Yuxin Lei… in Rice (2024)

Article

Correction: Genome-wide identification of ZmMYC2 binding sites and target genes in maize

Lijun Liu, Yuhan Zhang, Chen Tang, **e Wu, **gye Fu, Qiang Wang in BMC Genomics (2024)

Article

SEEI: spherical evolution with feedback mechanism for identifying epistatic interactions

Detecting epistatic interactions (EIs) involves the exploration of associations among single nucleotide polymorphisms (SNPs) and complex diseases, which is an important task in genome-wide association studies....

De-yu Tang, Yi-jun Mao, Jie Zhao, ** Yang, Shi-yin Li, Fu-xiang Ren… in BMC Genomics (2024)

Article

Comprehensive identification of maize ZmE2F transcription factors and the positive role of ZmE2F6 in response to drought stress

The early 2 factor (E2F) family is characterized as a kind of transcription factor that plays an important role in cell division, DNA damage repair, and cell size regulation. However, its stress response has n...

Yang Cao, Kexin Wang, Fengzhong Lu, Qi Li, Qingqing Yang, Bingliang Liu… in BMC Genomics (2024)

Article

Retraction Note: Molecular subtypes based on PANoptosis-related genes and tumor microenvironment infiltration characteristics in lower-grade glioma

Aimitaji Abulaiti, Aierpati Maimaiti, Nadire Yiming… in Functional & Integrative Genomics (2024)

Article

Comparative genomic analyses provide insight into the pathogenicity of three Pseudomonas syringae pv. actinidiae strains from Anhui Province, China

Pseudomonas syringae pv. actinidiae (Psa) is an important bacterial plant pathogen that causes severe damage to the kiwifruit industry worldwide. Three Psa strains were recently obtained from different kiwifruit ...

Qian Wang, Yiju Zhang, Rui Chen, Lei Zhang, Min Fu, Lixin Zhang in BMC Genomics (2024)

Article

Roles of post-translational modifications of UHRF1 in cancer

UHRF1 as a member of RING-finger type E3 ubiquitin ligases family, is an epigenetic regulator with five structural domains. It has been involved in the regulation of a series of biological functions, such as D...

Lili Gu, Yongming Fu, **ong Li in Epigenetics & Chromatin (2024)