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  1. Article

    Open Access

    Endothelial specific prolyl hydroxylase domain-containing protein 2 deficiency attenuates aging-related obesity and exercise intolerance

    Obesity and exercise intolerance greatly reduce the life quality of older people. Prolyl hydroxylase domain-containing protein 2 (PHD2) is an important enzyme in modulating hypoxia-inducible factor-alpha (HIF)...

    Lihong Pan, **aochen He, Rui Xu, Umesh Bhattarai, Ziru Niu, Jussara do Carmo in GeroScience (2024)

  2. Article

    Open Access

    Mycobacterium tuberculosis produces d-serine under hypoxia to limit CD8+ T cell-dependent immunity in mice

    Adaptation to hypoxia is a major challenge for the survival of Mycobacterium tuberculosis (Mtb) in vivo. Interferon (IFN)-γ-producing CD8+ T cells contribute to control of Mtb infection, in part by promoting anti...

    Hongyu Cheng, Zhe Ji, Yang Wang, Shenzhi Li, Tianqi Tang, Fei Wang in Nature Microbiology (2024)

  3. No Access

    Article

    A hypothetical model of phytoremediation for bioremediation of heavy metals toxicity in agricultural system

    Heavy metals contamination in agricultural soils has become a significant concern due to its detrimental effects on crop growth, productivity and food safety. Understanding the sources of heavy metals and impl...

    Abdul Jalal, Daochen Zhu in Plant Growth Regulation (2024)

  4. No Access

    Article

    Effects of the Concentrations of Nitrogen Supplied From Both or One-Half of the Dual-Root System on the Nitrogen Fixation of Soybean Nodules and the Distribution of Absorbed Nitrogen From Roots

    This study aimed to investigate the effects of the different concentrations of ammonium or nitrate supplied from both or one-half of the dual-root system on the nitrogen fixation of soybean nodules and the dis...

    **aochen Lyu, Xuelai Wang, Chu Xu in Journal of Soil Science and Plant Nutrition (2024)

  5. Article

    Open Access

    SMAD4 depletion contributes to endocrine resistance by integrating ER and ERBB signaling in HR + HER2− breast cancer

    Endocrine resistance poses a significant clinical challenge for patients with hormone receptor-positive and human epithelial growth factor receptor 2-negative (HR + HER2−) breast cancer. Dysregulation of estro...

    Kang Li, Dan Shu, Han Li, Ailin Lan, Wenjie Zhang, Zhaofu Tan in Cell Death & Disease (2024)

  6. Article

    Open Access

    Identification and molecular map** of resistance genes for adult-plant resistance to stripe rust in spring wheat germplasm line PI660076

    Wheat is one of the major food crops worldwide. Stripe rust can cause a great loss of wheat yield, especially when the disease is prevalent. Chemical control not only causes the loss of resistance to stripe ru...

    Runsheng Ren, Jianian Zhou, Yuqi Wang in Food Production, Processing and Nutrition (2024)

  7. No Access

    Article

    The multimodality cell segmentation challenge: toward universal solutions

    Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to ...

    Jun Ma, Ronald **e, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta in Nature Methods (2024)

  8. Article

    Open Access

    All-trans retinoic acid pretreatment of mesenchymal stem cells enhances the therapeutic effect on acute kidney injury

    A promising new therapy option for acute kidney injury (AKI) is mesenchymal stem cells (MSCs). However, there are several limitations to the use of MSCs, such as low rates of survival, limited homing capacity,...

    Yifan Zhang, **aochen Wang, Yuwei Ji, Haijuan Hong in Cell Communication and Signaling (2024)

  9. Article

    Open Access

    scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data

    In droplet-based single-cell and single-nucleus RNA-seq assays, systematic contamination of ambient RNA molecules biases the quantification of gene expression levels. Existing methods correct the contamination...

    Weijian Wang, Yihui Cen, Zezhen Lu, Yueqing Xu, Tianyi Sun, Ying **ao in Genome Biology (2024)

  10. Article

    Open Access

    Protein expression patterns and metal metabolites in a protogynous hermaphrodite fish, the ricefield eel (Monopterus albus)

    The ricefield eel Monopterus albus undergoes a natural sex change from female to male during its life cycle, and previous studies have shown the potential mechanisms of this transition at the transcriptional and ...

    Zhi He, Feng **ao, Deying Yang, Faqiang Deng, Wenxiang Ding, Zhide He in BMC Genomics (2024)

  11. No Access

    Article

    Pivotal role for long noncoding RNAs in zygotic genome activation in mice

    Vertebrate life begins with fertilization, and then the zygote genome is activated after transient silencing, a process termed zygotic genome activation (ZGA). Despite its fundamental role in totipotency and t...

    Kang Chen, Wenju Liu, Jiang Zhu, **aochen Kou, Yanhong Zhao in Science China Life Sciences (2024)

  12. No Access

    Article

    Decreased LTBP2 expression inhibits proliferation and migration of glioma

    Glioblastoma (GBM) is the most aggressive form of glioma. However, the treatment of GBM remains largely ineffective. LTBP2 is a secreted extracellular matrix protein involved in the progression of multiple tum...

    Yonghui Zhang, Yue Qin, **aochen Yu in Molecular & Cellular Toxicology (2024)

  13. Article

    Open Access

    MiR-134-5p inhibits the malignant phenotypes of osteosarcoma via ITGB1/MMP2/PI3K/Akt pathway

    Micro RNAs (miRs) have been implicated in various tumorigenic processes. Osteosarcoma (OS) is a primary bone malignancy seen in adolescents. However, the mechanism of miRs in OS has not been fully demonstrated...

    Lei Yan, Ruhao Zhou, Yi Feng, Ruoqi Li, Long Zhang, Yongchun Pan in Cell Death Discovery (2024)

  14. Article

    Open Access

    Integrated analysis of single-cell and bulk RNA sequencing data reveals prognostic characteristics of lysosome-dependent cell death-related genes in osteosarcoma

    Tumor cells exhibit a heightened susceptibility to lysosomal-dependent cell death (LCD) compared to normal cells. However, the role of LCD-related genes (LCD-RGs) in Osteosarcoma (OS) remains unelucidated. Thi...

    Yueshu Wu, Jun Yang, Gang Xu, **aolin Chen, **aochen Qu in BMC Genomics (2024)

  15. Article

    Open Access

    Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging

    Understanding the genetic architecture of brain structure is challenging, partly due to difficulties in designing robust, non-biased descriptors of brain morphology. Until recently, brain measures for genome-w...

    Khush Patel, Ziqian **e, Hao Yuan, Sheikh Muhammad Saiful Islam in Communications Biology (2024)

  16. Article

    Open Access

    Association of birth weight with type 2 diabetes mellitus and the mediating role of fatty acids traits: a two-step mendelian randomization study

    Observational studies have suggested an association between birth weight and type 2 diabetes mellitus, but the causality between them has not been established. We aimed to obtain the causal relationship betwee...

    Limin Cao, Yahui Wen, Keyi Fan, Qiwei Wang, Yaochen Zhang in Lipids in Health and Disease (2024)

  17. No Access

    Article

    Effects of different ecological restoration methods on the soil bacterial community structure of a light rare earth tailings pond

    The characteristics of microbial communities can directly reflect the physicochemical properties of soil which is important for successful ecological restoration in the tailings pond.

    Tianyu Chen, Ning Qu, **xiao Wang, Yaochen Liu, Jiao Feng, Shilei Zhang in Plant and Soil (2024)

  18. Article

    Open Access

    Mycobacterium tuberculosis inhibits METTL14-mediated m6A methylation of Nox2 mRNA and suppresses anti-TB immunity

    Internal N6-methyladenosine (m6A) modifications are among the most abundant modifications of messenger RNA, playing a critical role in diverse biological and pathological processes. However, the functional role a...

    Mingtong Ma, Yongjia Duan, Cheng Peng, You Wu, **nning Zhang, Boran Chang in Cell Discovery (2024)

  19. Article

    Open Access

    Combined metagenomics and metabolomic analysis of microbial community structure and metabolic function in continuous soybean crop** soils of Songnen Plain, China

    Continuous crop** has a negative effect on soybean yield. In this study, a positioning experiment was conducted starting in 2015, with three treatments: maize–soybean rotation (SMR), 2-year maize, 2-year soy...

    Letian Xu, Shun **, Yue Su, **aochen Lyu in Chemical and Biological Technologies in Ag… (2024)

  20. Article

    Open Access

    Genome-wide identification analysis of the 4-Coumarate: CoA ligase (4CL) gene family expression profiles in Juglans regia and its wild relatives J. Mandshurica resistance and salt stress

    Persian walnut (Juglans regia) and Manchurian walnut (Juglans mandshurica) belong to Juglandaceae, which are vulnerable, temperate deciduous perennial trees with high economical, ecological, and industrial values...

    Jiayu Ma, Dongjun Zuo, Xuedong Zhang, Haochen Li, Hang Ye in BMC Plant Biology (2024)

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