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  1. No Access

    Article

    CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells

    Dynamic imaging of genomic loci is key for understanding gene regulation, but methods for imaging genomes, in particular non-repetitive DNAs, are limited. We developed CRISPRdelight, a DNA-labeling system base...

    Liang-Zhong Yang, Yi-Hui Min, Yu-**n Liu, Bao-Qing Gao, **ao-Qi Liu in Nature Methods (2024)

  2. Article

    Open Access

    Med1 inhibits ferroptosis and alleviates liver injury in acute liver failure via Nrf2 activation

    Extensive hepatocyte mortality and the absence of specific medical therapy significantly contribute to the unfavorable prognosis of acute liver failure (ALF). Ferroptosis is a crucial form of cell death involv...

    Zi-Ying Lei, Zhi-Hui Li, Deng-Na Lin, **g Cao, Jun-Feng Chen in Cell & Bioscience (2024)

  3. Article

    Open Access

    Lessons learned: establishing a CLIA-equivalent laboratory for targeted mass spectrometry assays – navigating the transition from research to clinical practice

    Mass spectrometry (MS) assays offer exceptional capabilities in high multiplexity, specificity, and throughput. As proteomics technologies continue advancements to identify new disease biomarkers, transition o...

    Chia-Li Han, Chi-Ting Lai, Aaron James Reyes, Hao-Chin Yang in Clinical Proteomics (2024)

  4. Article

    Open Access

    Identification and characterization of differentially expressed circular RNAs in extraocular muscle of oculomotor nerve palsy

    Oculomotor nerve palsy (ONP) is a neuroparalytic disorder resulting in dysfunction of innervating extraocular muscles (EOMs), of which the pathological characteristics remain underexplored.

    Mingsu Shi, Yanxi Fang, Yu Liang, Yuxiang Hu, Jiaqiu Huang, Weiyi **a in BMC Genomics (2023)

  5. Article

    Open Access

    Genome-wide analysis of the MADS-box gene family in Lonicera japonica and a proposed floral organ identity model

    Lonicera japonica Thunb. is widely used in traditional Chinese medicine. Medicinal L. japonica mainly consists of dried flower buds and partially opened flowers, thus flowers are an important quality indicator. M...

    Yi Lin, **wu Qi, Yan Wan, Zequn Chen, Hailing Fang, Chengyuan Liang in BMC Genomics (2023)

  6. Article

    Open Access

    Lineage-specific amplification and epigenetic regulation of LTR-retrotransposons contribute to the structure, evolution, and function of Fabaceae species

    Long terminal repeat (LTR)-retrotransposons (LTR-RTs) are ubiquitous and make up the majority of nearly all sequenced plant genomes, whereas their pivotal roles in genome evolution, gene expression regulation ...

    Long-Long Yang, **n-Yu Zhang, Li-Ying Wang, Yan-Ge Li, **ao-Ting Li in BMC Genomics (2023)

  7. No Access

    Article

    Mesenchymal stem cells suppressed skin and lung inflammation and fibrosis in topoisomerase I-induced systemic sclerosis associated with lung disease mouse model

    Systemic sclerosis associated with lung interstitial lung disease (SSc-ILD) is the most common cause of death among patients with SSc. Mesenchymal stem cell (MSCs) transplantations had been treated by SSc pati...

    Nithya Ganesan, Yu-Di Chang, Shih-Chieh Hung, Joung-Liang Lan in Cell and Tissue Research (2023)

  8. Article

    Open Access

    Transcriptome analysis of critical genes related to flowering in Mikania micrantha at different altitudes provides insights for a potential control

    Mikania micrantha is a vine with strong invasion ability, and its strong sexual reproduction ability is not only the main factor of harm, but also a serious obstacle to control. M. micrantha spreads mainly throug...

    Chen Liang, Ling Liu, Zhixiao Zhang, Sangzi Ze, Ling Pei, Lichen Feng in BMC Genomics (2023)

  9. Article

    Open Access

    Comparative analysis of mitochondrial genomes reveals marine adaptation in seagrasses

    Seagrasses are higher marine flowering plants that evolved from terrestrial plants, but returned to the sea during the early evolution of monocotyledons through several separate lineages. Thus, they become a g...

    Jun Chen, Yu Zang, Shuo Liang, Song Xue, Shuai Shang, Meiling Zhu in BMC Genomics (2022)

  10. Article

    Open Access

    mTORC1-c-Myc pathway rewires methionine metabolism for HCC progression through suppressing SIRT4 mediated ADP ribosylation of MAT2A

    Exploiting cancer metabolism during nutrient availability holds immense potential for the clinical and therapeutic benefits of hepatocellular carcinoma (HCC) patients. Dietary methionine is a metabolic depende...

    Liang Zhao, Huizhao Su, **aomeng Liu, Hongquan Wang, Yukuan Feng in Cell & Bioscience (2022)

  11. Article

    Open Access

    Proteomics data analysis using multiple statistical approaches identified proteins and metabolic networks associated with sucrose accumulation in sugarcane

    Sugarcane is the most important sugar crop, contributing > 80% of global sugar production. High sucrose content is a key target of sugarcane breeding, yet sucrose improvement in sugarcane remains extremely slo...

    Ao-Mei Li, Zhong-Liang Chen, Cui-**an Qin, Zi-Tong Li, Fen Liao in BMC Genomics (2022)

  12. Article

    Open Access

    MiR-615 Agomir Encapsulated in Pluronic F-127 Alleviates Neuron Damage and Facilitates Function Recovery After Brachial Plexus Avulsion

    Brachial plexus avulsion (BPA) is a devastating traumatic peripheral nerve injury complicated with paralysis of the upper extremity. We previously reported that leucine-rich repeat and immunoglobulin-like doma...

    Kangzhen Chen, Lu Ding, Hua Shui, Yinru Liang in Journal of Molecular Neuroscience (2022)

  13. Article

    Open Access

    Genome-wide investigation and expression profiling of polyphenol oxidase (PPO) family genes uncover likely functions in organ development and stress responses in Populus trichocarpa

    Trees such as Populus are planted extensively for reforestation and afforestation. However, their successful establishment greatly depends upon ambient environmental conditions and their relative resistance to ab...

    Fang He, Yu-Jie Shi, Qian Zhao, Kuang-Ji Zhao, **ng-Lei Cui, Liang-Hua Chen in BMC Genomics (2021)

  14. No Access

    Article

    An adaptive optics module for deep tissue multiphoton imaging in vivo

    Understanding complex biological systems requires visualizing structures and processes deep within living organisms. We developed a compact adaptive optics module and incorporated it into two- and three-photon...

    Cristina Rodríguez, Anderson Chen, José A. Rivera, Manuel A. Mohr in Nature Methods (2021)

  15. No Access

    Article

    Screening for functional circular RNAs using the CRISPR–Cas13 system

    Circular RNAs (circRNAs) produced from back-spliced exons are widely expressed, but individual circRNA functions remain poorly understood owing to the lack of adequate methods for distinguishing circRNAs from ...

    Siqi Li, **ang Li, Wei Xue, Lin Zhang, Liang-Zhong Yang, Shi-Meng Cao in Nature Methods (2021)

  16. No Access

    Article

    Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo

    Understanding information processing in the brain requires monitoring neuronal activity at high spatiotemporal resolution. Using an ultrafast two-photon fluorescence microscope empowered by all-optical laser s...

    Jianglai Wu, Yajie Liang, Shuo Chen, Ching-Lung Hsu, Mariya Chavarha in Nature Methods (2020)

  17. Article

    Open Access

    Function and dysfunction of plasma cells in intestine

    As the main player in humoral immunity, antibodies play indispensable roles in the body’s immune system. Plasma cells (PCs), as antibody factories, are important contributors to humoral immunity. PCs, recogniz...

    Xue Wang, Gui-liang Hao, Bo-ya Wang, Chen-chen Gao, Yue-xiu Wang in Cell & Bioscience (2019)

  18. Article

    Open Access

    Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi

    Emerging evidence indicates that plant miRNAs can present within human circulating system through dietary intake and regulate human gene expression. Hence we deduced that comestible plants miRNAs can be identi...

    Yu-Chen Liu, Wen Liang Chen, Wei-Hsiang Kung, Hsien-Da Huang in BMC Genomics (2017)

  19. Article

    Open Access

    Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat

    Soil alkalinity shows significant constraints to crop productivity; however, much less attention has been paid to analyze the effect of soil alkalinity on plant growth and development. Shanrong No. 4 (SR4) is ...

    Chen Meng, Tai-Yong Quan, Zhong-Yi Li, Kang-Li Cui, Li Yan, Yu Liang in BMC Genomics (2017)

  20. No Access

    Article

    Simultaneous Sensitive MEKC–LIF Determination of Homocysteine, Homoarginine, and Six Arginine Metabolic Derivatives in Fluids from Type 2 Diabetics with Peptic Ulcer Bleeding

    The suitability of micellar electrokinetic capillary chromatography (MEKC) with laser-induced fluorescence (LIF) detection for simultaneous determination of two arginine analogues (homocysteine and homoarginin...

    Qian** Liang, Hongchao Chen, Fuqing Li, **aolin Du in Chromatographia (2015)

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