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A spatiotemporal atlas of mouse liver homeostasis and regeneration

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  1. Article

    Open Access

    Single-cell transcriptomics reveal distinct immune-infiltrating phenotypes and macrophage–tumor interaction axes among different lineages of pituitary neuroendocrine tumors

    Pituitary neuroendocrine tumors (PitNETs) are common gland neoplasms demonstrating distinctive transcription factors. Although the role of immune cells in PitNETs has been widely recognized, the precise immuno...

    Shaojian Lin, Yuting Dai, Changxi Han, Tianyi Han, Linfeng Zhao in Genome Medicine (2024)

  2. Article

    Open Access

    Single-cell RNA sequencing reveals cellular and molecular landscape of fetal cystic hygroma

    The molecular mechanism of fetal cystic hygroma (CH) is still unclear, and no study has previously reported the transcriptome changes of single cells in CH. In this study, single-cell transcriptome sequencing ...

    Fang Fu, **n Yang, Ru Li, Yingsi Li, Hang Zhou, Ken Cheng in BMC Medical Genomics (2024)

  3. Article

    Open Access

    Integrated analysis identifies GABRB3 as a biomarker in prostate cancer

    Treatment failure following androgen deprivation therapy (ADT) presents a significant challenge in the management of advanced prostate cancer. Thus, understanding the genetic factors influencing this process c...

    Jun-Yan Chen, Chi-Fen Chang, Shu-Pin Huang, Chao-Yuan Huang in BMC Medical Genomics (2024)

  4. Article

    Open Access

    Quantitative thresholds for variant enrichment in 13,845 cases: improving pathogenicity classification in genetic hearing loss

    The American College of Medical Genetics and Genomics (ACMG)/Association for Molecular Pathology (AMP) guidelines recommend using variant enrichment among cases as "strong" evidence for pathogenicity per the P...

    Sihan Liu, Mingjun Zhong, Yu Huang, Qian Zhang, Ting Chen, **aofei Xu in Genome Medicine (2023)

  5. Article

    Open Access

    Prenatal diagnosis and perinatal outcomes of twin pregnancies disharmonious for one fetus with nuchal translucency above the 95th percentile

    To assess prenatal diagnosis and pregnancy outcomes in twin pregnancies where one fetus has nuchal translucency (NT) above the 95th percentile.

    You Wang, Hang Zhou, Fang Fu, Ken Cheng, Ruibin Huang, Ru Li in Molecular Cytogenetics (2023)

  6. Article

    Open Access

    Decreased B4GALT1 promotes hepatocellular carcinoma cell invasiveness by regulating the laminin-integrin pathway

    Beta1,4-galactosyltransferases (B4GALTs) play a crucial role in several diseases, including cancer. B4GALT1 is highly expressed in the liver, and patients with mutations in B4GALT1 exhibit hepatopathy. However, t...

    Po-Da Chen, Ying-Yu Liao, Yu-Chia Cheng, Hsin-Yi Wu, Yao-Ming Wu in Oncogenesis (2023)

  7. Article

    Open Access

    The pseudokinase NRBP1 activates Rac1/Cdc42 via P-Rex1 to drive oncogenic signalling in triple-negative breast cancer

    We have determined that expression of the pseudokinase NRBP1 positively associates with poor prognosis in triple negative breast cancer (TNBC) and is required for efficient migration, invasion and proliferatio...

    Xue Yang, Miguel I. Cruz, Elizabeth V. Nguyen, Cheng Huang in Oncogene (2023)

  8. Article

    Open Access

    Distinct DNA methylation signatures associated with blood lipids as exposures or outcomes among survivors of childhood cancer: a report from the St. Jude lifetime cohort

    DNA methylation (DNAm) plays an important role in lipid metabolism, however, no epigenome-wide association study (EWAS) of lipid levels has been conducted among childhood cancer survivors. Here, we performed E...

    Qian Dong, Cheng Chen, Nan Song, Na Qin, Noel-Marie Plonski in Clinical Epigenetics (2023)

  9. Article

    Open Access

    Genome-wide placental DNA methylations in fetal overgrowth and associations with leptin, adiponectin and fetal growth factors

    Fetal overgrowth “programs” an elevated risk of type 2 diabetes in adulthood. Epigenetic alterations may be a mechanism in programming the vulnerability. We sought to characterize genome-wide alterations in pl...

    Meng-Nan Yang, Rong Huang, Tao Zheng, Yu Dong, Wen-Juan Wang in Clinical Epigenetics (2022)

  10. Article

    Open Access

    Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis

    Genetic variants within nearly 1000 loci are known to contribute to modulation of blood lipid levels. However, the biological pathways underlying these associations are frequently unknown, limiting understandi...

    Stavroula Kanoni, Sarah E. Graham, Yuxuan Wang, Ida Surakka in Genome Biology (2022)

  11. Article

    Open Access

    METTL4-mediated nuclear N6-deoxyadenosine methylation promotes metastasis through activating multiple metastasis-inducing targets

    DNA N6-methyldeoxyadenosine (6mA) is rarely present in mammalian cells and its nuclear role remains elusive.

    Kai-Wen Hsu, Joseph Chieh-Yu Lai, Jeng-Shou Chang, Pei-Hua Peng in Genome Biology (2022)

  12. Article

    Open Access

    PDCD5 inhibits progression of renal cell carcinoma by promoting T cell immunity: with the involvement of the HDAC3/microRNA-195-5p/SGK1

    Epigenetics exerts a vital role in the onset and development of renal cell carcinoma (RCC). Mounting evidence has shed light on the significance of human immune system in response to tumor infiltrating T cells...

    Shu-cheng Liu, Li-bo Chen, **-feng Chen, Meng-long Huang in Clinical Epigenetics (2022)

  13. Article

    Open Access

    CRNDE acts as an epigenetic modulator of the p300/YY1 complex to promote HCC progression and therapeutic resistance

    Hepatocellular carcinoma (HCC) is one of the most common primary liver malignancies worldwide. The long-term prognosis for HCC remains extremely poor, with drug resistance being the major underlying cause of r...

    Yu-Chin Liu, Yang-Hsiang Lin, Hsiang-Cheng Chi, Po-Shuan Huang in Clinical Epigenetics (2022)

  14. Article

    Open Access

    Target residence of Cas9-sgRNA influences DNA double-strand break repair pathway choices in CRISPR/Cas9 genome editing

    Due to post-cleavage residence of the Cas9-sgRNA complex at its target, Cas9-induced DNA double-strand breaks (DSBs) have to be exposed to engage DSB repair pathways. Target interaction of Cas9-sgRNA determine...

    Si-Cheng Liu, Yi-Li Feng, **u-Na Sun, Ruo-Dan Chen, Qian Liu in Genome Biology (2022)

  15. Article

    Open Access

    Adjunct diagnostic value of radiological findings in mucopolysaccharidosis type IVa-related thoracic spinal abnormalities: a pilot study

    In patients with mucopolysaccharidosis (MPS), systematic assessment and management of cervical instability, cervicomedullary and thoracolumbar junction spinal stenosis and spinal cord compression averts or arr...

    Ya-Ting Jan, Pei-Shan Tsai, Wen-Hui Huang in Orphanet Journal of Rare Diseases (2022)

  16. Article

    Open Access

    LIN28 coordinately promotes nucleolar/ribosomal functions and represses the 2C-like transcriptional program in pluripotent stem cells

    LIN28 is an RNA binding protein with important roles in early embryo development, stem cell differentiation/reprogramming, tumorigenesis and metabolism. Previous studies have focused mainly on its role in the ...

    Zhen Sun, Hua Yu, **g Zhao, Tianyu Tan, Hongru Pan, Yuqing Zhu in Protein & Cell (2022)

  17. Article

    Open Access

    Prenatal diagnosis of Williams-Beuren syndrome by ultrasound and chromosomal microarray analysis

    There are a few literature reports of prenatal ultrasound manifestations of Williams-Beuren syndrome. We aimed to explore the prenatal diagnosis of Williams-Beuren syndrome by ultrasound and chromosomal microa...

    Ruibin Huang, Hang Zhou, Fang Fu, Ru Li, Tingying Lei, Yingsi Li in Molecular Cytogenetics (2022)

  18. Article

    Open Access

    Bi-order multimodal integration of single-cell data

    Integration of single-cell multiomics profiles generated by different single-cell technologies from the same biological sample is still challenging. Previous approaches based on shared features have only provi...

    **zhuang Dou, Shaoheng Liang, Vakul Mohanty, Qi Miao, Yuefan Huang in Genome Biology (2022)

  19. Article

    Open Access

    Stratification of lncRNA modulation networks in breast cancer

    Recently, non-coding RNAs are of growing interest, and more scientists attach importance to research on their functions. Long non-coding RNAs (lncRNAs) are defined as non-protein coding transcripts longer than...

    Wen-Hsuan Yu, Chia-Lang Hsu, Chen-Ching Lin, Yen-Jen Oyang in BMC Medical Genomics (2022)

  20. Article

    Open Access

    Genome-wide association studies identify novel genetic loci for epigenetic age acceleration among survivors of childhood cancer

    Increased epigenetic age acceleration (EAA) in survivors of childhood cancer is associated with specific treatment exposures, unfavorable health behaviors, and presence of certain chronic health conditions. To...

    Qian Dong, Nan Song, Na Qin, Cheng Chen, Zhenghong Li, **aojun Sun in Genome Medicine (2022)

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