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  1. No Access

    Protocol

    Analysis and Visualization of Protein Channels, Tunnels, and Pores with MOLEonline and ChannelsDB 2.0

    Channels, tunnels, and pores serve as pathways for the transport of molecules and ions through protein structures, thus participating to their functions. MOLEonline (https://mole.upol.cz

    Anna Špačková, Václav Bazgier, Tomáš Raček, David Sehnal… in Protein Bioinformatics (2024)

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    Protocol

    Visualization and Analysis of Protein Structures with LiteMol Suite

    LiteMol suite is an innovative solution that enables near-instant delivery of model and experimental biomacromolecular structural data, providing users with an interactive and responsive experience in all mode...

    David Sehnal, Radka Svobodová, Karel Berka, Lukáš Pravda… in Structural Bioinformatics (2020)

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    Protocol

    Automated Family-Wide Annotation of Secondary Structure Elements

    Secondary structure elements (SSEs) are inherent parts of protein structures, and their arrangement is characteristic for each protein family. Therefore, annotation of SSEs can facilitate orientation in the va...

    Adam Midlik, Ivana Hutařová Vařeková, Jan Hutař… in Protein Supersecondary Structures (2019)