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  1. No Access

    Protocol

    Predicting Pseudouridine Sites with Porpoise

    is a ubiquitous modification and plays a crucial role in many biological processes. However, it remains a challenging task to identify sites using expensive and time-consuming experimental research. To th...

    Xudong Guo, Fuyi Li, Jiangning Song in Computational Epigenomics and Epitranscriptomics (2023)

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    Protocol

    Systematic Characterization of Lysine Post-translational Modification Sites Using MUscADEL

    Among various types of protein post-translational modifications (PTMs), lysine PTMs play an important role in regulating a wide range of functions and biological processes. Due to the generation and accumulat...

    Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li… in Computational Methods for Predicting Post-… (2022)

  3. No Access

    Protocol

    Inference Method for Develo** Mathematical Models of Cell Signaling Pathways Using Proteomic Datasets

    The progress in proteomics technologies has led to a rapid accumulation of large-scale proteomic datasets in recent years, which provides an unprecedented opportunity and valuable resources to understand how l...

    Tianhai Tian, Jiangning Song in Bioinformatics (2017)