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    Chapter and Conference Paper

    Exploring the Automatisation of Animal Health Surveillance Through Natural Language Processing

    The Animal and Plant Health Agency (APHA) conducts post-mortem examinations (PMEs) of farm animal species as part of routine scanning surveillance for new and re-emerging diseases that may pose a threat to an...

    Mercedes Arguello-Casteleiro, Philip H. Jones in Artificial Intelligence XXXVI (2019)

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    Chapter and Conference Paper

    A Suite of Computationally Expensive Shape Optimisation Problems Using Computational Fluid Dynamics

    In many product design and development applications, Computational Fluid Dynamics (CFD) has become a useful tool for analysis. This is particularly because of the accuracy of CFD simulations in predicting the ...

    Steven J. Daniels, Alma A. M. Rahat in Parallel Problem Solving from Nature – PPS… (2018)

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    Chapter and Conference Paper

    Protecting Document Outside Enterprise Network: A Confirmed Framework

    Sharing e-documents are important components of any enterprise workflow. Kee** these e-documents secure is fundamental to enterprise security, especially in multi-site enterprises or when sharing e-documents...

    Zeyad S. Aaber, Gary B. Wills, Richard M. Crowder in Enterprise Security (2017)

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    Chapter and Conference Paper

    Characterizing Word Problems of Groups

    The word problem of a finitely generated group is a fundamental notion in group theory; it can be defined as the set of all the words in the generators of the group that represent the identity element of the g...

    Sam A. M. Jones, Richard M. Thomas in Reachability Problems (2016)

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    Chapter and Conference Paper

    Groups Whose Word Problem is a Petri Net Language

    There has been considerable interest in exploring the connections between the word problem of a finitely generated group as a formal language and the algebraic structure of the group. However, there are few co...

    Gabriela Aslı Rino Nesin, Richard M. Thomas in Descriptional Complexity of Formal Systems (2015)

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    Chapter and Conference Paper

    Formal Languages, Word Problems of Groups and Decidability

    This paper considers questions relating formal languages to word problems of groups with a particular emphasis on the decidability of some problems that arise. We investigate the decidability of certain natura...

    Sam A. M. Jones, Richard M. Thomas in Reachability Problems (2013)

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    Chapter and Conference Paper

    Theory of Computation as an Enabling Tool for the Sciences

    Researchers in the theory of computation are increasingly adopting a computational worldview that is radiating out to a wide circle of scientific and technological fields, recognizing that central phenomena of...

    Richard M. Karp in Theory and Applications of Models of Computation (2012)

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    Chapter and Conference Paper

    Reconstructing Boolean Models of Signaling

    Since the first emergence of protein-protein interaction networks, more than a decade ago, they have been viewed as static scaffolds of the signaling-regulatory events taking place in the cell and their analys...

    Roded Sharan, Richard M. Karp in Research in Computational Molecular Biology (2012)

  9. Chapter and Conference Paper

    NSA’s Role in the Development of DES

    38 years ago, NIST put out a call for submissions of candidates for data encryption standard to address the needs of encryption for the commercial world. Of the submissions, the IBM submission stood out as arg...

    Richard M. George in Topics in Cryptology – CT-RSA 2011 (2011)

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    Chapter and Conference Paper

    Algorithms to Detect Multiprotein Modularity Conserved during Evolution

    Detecting essential multiprotein modules that change infrequently during evolution is a challenging algorithmic task that is important for understanding the structure, function, and evolution of the biological...

    Luqman Hodgkinson, Richard M. Karp in Bioinformatics Research and Applications (2011)

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    Chapter and Conference Paper

    Singular Artin Monoids of Finite Coxeter Type Are Automatic

    We consider the positive singular and the singular Artin monoids of finite type. These have been the subject of a great deal of recent research and the main purpose of this paper is to prove that these monoids...

    Ruth Corran, Michael Hoffmann in Language and Automata Theory and Applicati… (2011)

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    Chapter and Conference Paper

    Pedigree Reconstruction Using Identity by Descent

    Can we find the family trees, or pedigrees, that relate the haplotypes of a group of individuals? Collecting the genealogical information for how individuals are related is a very time-consuming and expensive ...

    Bonnie Kirkpatrick, Shuai Cheng Li in Research in Computational Molecular Biology (2011)

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    Chapter and Conference Paper

    Implicit Hitting Set Problems and Multi-genome Alignment

    Let U be a finite set and S a family of subsets of U. Define a hitting set as a subset of U that intersects every element of S. The optimal hitting set problem is: given a positive weight for each element of U...

    Richard M. Karp in Combinatorial Pattern Matching (2010)

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    Chapter and Conference Paper

    Topology-Free Querying of Protein Interaction Networks

    In the network querying problem, one is given a protein complex or pathway of species A and a protein–protein interaction network of species B; the goal is to identify subnetworks of B that are similar to the que...

    Sharon Bruckner, Falk Hüffner in Research in Computational Molecular Biology (2009)

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    Chapter and Conference Paper

    Haplotype Inference in Complex Pedigrees

    Despite the desirable information contained in complex pedigree datasets, analysis methods struggle to efficiently process these datasets. The attractiveness of pedigree data sets is their power for detecting ...

    Bonnie Kirkpatrick, Javier Rosa in Research in Computational Molecular Biology (2009)

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    Chapter and Conference Paper

    Evolvability Via Modularity-Induced Mutational Focussing

    This work postulates a mechanism by which random genotypic variation is directed towards favourable phenotypic variation. Evolvability is a poorly understood concept at present: it is unclear precisely how the...

    Richard M. Downing in Genetic Programming (2008)

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    Chapter and Conference Paper

    Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles

    We present a method for identifying connected gene subnetworks significantly enriched for genes that are dysregulated in specimens of a disease. These subnetworks provide a signature of the disease potentially...

    Igor Ulitsky, Richard M. Karp, Ron Shamir in Research in Computational Molecular Biology (2008)

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    Chapter and Conference Paper

    On Population Size and Neutrality: Facilitating the Evolution of Evolvability

    The role of population size is investigated within a neutrality induced local optima free search space. Neutrality decouples genotypic variation in evolvability from fitness variation. Population diversity and...

    Richard M. Downing in Genetic Programming (2007)

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    Chapter and Conference Paper

    Notions of Hyperbolicity in Monoids

    We introduce a notion of hyperbolicity in monoids which is a restriction of that suggested by Duncan and Gilman. One advantage is that the notion gives rise to efficient algorithms for dealing with certain que...

    Michael Hoffmann, Richard M. Thomas in Fundamentals of Computation Theory (2007)

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    Chapter and Conference Paper

    Streaming Algorithms for Selection and Approximate Sorting

    Companies such as Google, Yahoo and Microsoft maintain extremely large data repositories within which searches are frequently conducted. In an article entitled “Data-Intensive Supercomputing: The case for DISC...

    Richard M. Karp in FSTTCS 2007: Foundations of Software Techn… (2007)

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