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  1. No Access

    Chapter and Conference Paper

    ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection

    The detection of epistatic interactions among multiple single-nucleotide polymorphisms (SNPs) in complex diseases has posed a significant challenge in genome-wide association studies (GWAS). However, most exis...

    Qianqian Ren, Yahan Li, Feng Li, **-**ng Liu in Bioinformatics Research and Applications (2023)

  2. No Access

    Chapter and Conference Paper

    PCPI: Prediction of circRNA and Protein Interaction Using Machine Learning Method

    Circular RNA (circRNA) is an RNA molecule different from linear RNA with covalently closed loop structure. CircRNAs can act as sponging miRNAs and can interact with RNA binding protein. Previous studies have r...

    Md. Tofazzal Hossain, Md. Selim Reza, Xuelei Li in Bioinformatics Research and Applications (2023)

  3. No Access

    Chapter and Conference Paper

    scGASI: A Graph Autoencoder-Based Single-Cell Integration Clustering Method

    Single-cell RNA sequencing (scRNA-seq) technology offers the opportunity to study biological issues at the cellular level. The identification of single-cell types by unsupervised clustering is a basic goal of ...

    Tian-**g Qiao, Feng Li, Shasha Yuan in Bioinformatics Research and Applications (2023)

  4. No Access

    Chapter and Conference Paper

    A Network-Based Voting Method for Identification and Prioritization of Personalized Cancer Driver Genes

    Identifying cancer driver genes is an important task in cancer research. Numerous methods that identify these driver genes have been proposed, most of which identify driver genes in entire patient cohorts. How...

    Han Li, Feng Li, Junliang Shang, **kui Liu in Bioinformatics Research and Applications (2022)

  5. No Access

    Chapter and Conference Paper

    Fusing Label Relations for Chinese EMR Named Entity Recognition with Machine Reading Comprehension

    Chinese electronic medical records named entity recognition (NER) is a core task in medical knowledge mining, which is usually viewed as a sequence labeling problem. Recent works introduce the machine reading ...

    Shuyue Liu, Junwen Duan, Feng Gong, Hailin Yue in Bioinformatics Research and Applications (2022)

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    Chapter and Conference Paper

    TDCOSR: A Multimodality Fusion Framework for Association Analysis Between Genes and ROIs of Alzheimer’s Disease

    The complementary multimodality data fusion analysis provides a new perspective for revealing associations between genes and brain regions of interests (ROIs) of Alzheimer’s disease (AD). In this paper, we pro...

    Qi Zou, Yan Sun, Feng Li, Juan Wang in Bioinformatics Research and Applications (2022)

  7. No Access

    Chapter and Conference Paper

    Sensitivity Analysis of Adhesion in Computational Model of Elastic Doublet

    This work introduces a computational model of elastic double cluster. We describe a method to create a partially flattened spherical cell and a mirroring process that creates a symmetrical double cluster with ...

    Alžbeta Bohiniková, Iveta Jančigová in Bioinformatics and Biomedical Engineering (2022)

  8. No Access

    Chapter and Conference Paper

    EEG-Based Emotion Recognition Fusing Spacial-Frequency Domain Features and Data-Driven Spectrogram-Like Features

    Research on emotion recognition based on EEG (electroencephalogram) signals has gradually become a hot spot in the field of artificial intelligence applications. The recognition methods mainly include designin...

    Chen Wang, **gzhao Hu, Ke Liu, Qiaomei Jia in Bioinformatics Research and Applications (2021)

  9. No Access

    Chapter and Conference Paper

    Improving Protein-protein Interaction Prediction by Incorporating 3D Genome Information

    Numerous computational methods have been proposed to predict protein-protein interactions, none of which however, considers the original DNA loci of the interacting proteins in the perspective of 3D genome. He...

    Zehua Guo, Kai Su, Liangjie Liu, **anbin Su in Bioinformatics Research and Applications (2021)

  10. No Access

    Chapter and Conference Paper

    Exploiting Multi-granular Features for the Enhanced Predictive Modeling of COPD Based on Chinese EMRs

    Building a predictive model to understand a patient’s status and the future progression of disease is an important precondition for facilitating preventive care to reduce the burden of chronic obstructive pulm...

    Qing Zhao, Renyan Feng, Jianqiang Li, Yanhe Jia in Bioinformatics Research and Applications (2021)

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    Chapter and Conference Paper

    SuccSPred: Succinylation Sites Prediction Using Fused Feature Representation and Ranking Method

    Protein succinylation is a novel type of post-translational modification in recent decade ...

    Ruiquan Ge, Yizhang Luo, Guanwen Feng in Bioinformatics Research and Applications (2021)

  12. No Access

    Chapter and Conference Paper

    The Classification System and Biomarkers for Autism Spectrum Disorder: A Machine Learning Approach

    Autism spectrum disorder (ASD) is a kind of neurodevelopmental disorder. ASD patients are usually difficult in social communication and daily life, and there are no drugs to cure ASD. A large number of clinica...

    Zhongyang Dai, Haishan Zhang, Feifei Lin in Bioinformatics Research and Applications (2021)

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    Chapter and Conference Paper

    Batch Weighted Nuclear-Norm Minimization for Medical Image Sequence Segmentation

    Recently, convolutional neural networks have shown their superior performance for biomedical image sequence segmentation. Most of the current state-of-the-art segmentation methods are designed for segmentation...

    Kele Xu, Zijian Gao, Jilong Wang, Yang Wen in Bioinformatics Research and Applications (2021)

  14. No Access

    Chapter and Conference Paper

    Taurine Prevented Hypoxia Induced Chicken Cardiomyocyte Apoptosis Through the Inhibition of Mitochondrial Pathway Activated by Calpain-1

    Objective To determine whether taurine has protective effects on chicken myocardial apoptosis induced by hypoxic condition through inhibiting calpain-1 derived mitochondrial apoptotic pathway. Methods Chicken pri...

    Qiufeng Lv, Jiancheng Yang, Yue Wang, Mei Liu, Ying Feng, Gaofeng Wu in Taurine 11 (2019)

  15. No Access

    Chapter and Conference Paper

    Preventive or Curative Administration of Taurine Regulates Lipid Metabolism in the Liver of Rats with Alcoholic Liver Disease

    Excessive consumption causes alcoholic liver disease (ALD), which injures hepatocytes and induces imbalance of lipid metabolism. Taurine is known to protect the liver from various liver injuries, and relieve l...

    Riyi Tang, Qunhui Yang, Shumei Lin, Ying Feng, Jiancheng Yang, Qiufeng Lv in Taurine 11 (2019)

  16. No Access

    Chapter and Conference Paper

    Taurine Inhibited Uric Acid Uptake in HK-2 Renal Tubular Epithelial Cells

    It has been confirmed by our laboratory that taurine could decrease uric acid levels in hyperuricemic rats and regulate the expressions of some urate transporters. The present study aims to investigate the eff...

    Ying Feng, Shumei Lin, **aoyan Zhao, Qunhui Yang, Gaofeng Wu, Qiufeng Lv in Taurine 11 (2019)

  17. No Access

    Chapter and Conference Paper

    Taurine Improves Lipid Metabolism and Skeletal Muscle Sensitivity to Insulin in Rats Fed with High Sugar and High Fat Diet

    Metabolic syndrome is a lifestyle-related disease caused by high nutrient condition and lack of exercise. The insulin resistance due to obesity has attracted attention as an underlying mechanism of metabolic s...

    Dongdong Zhao, Qiufeng Lv, Jiancheng Yang, Gaofeng Wu, Mei Liu, Qunhui Yang in Taurine 11 (2019)

  18. No Access

    Chapter and Conference Paper

    Anti-Cancer Mechanisms of Taurine in Human Nasopharyngeal Carcinoma Cells

    Taurine displays anti-tumor activity in some kinds of human cancers. However, the underlying mechanisms are poorly understood. Epstein-Barr virus-related nasopharyngeal carcinoma (NPC) is a distinctive type of...

    Feng He, Ning Ma, Kaoru Midorikawa, Yusuke Hiraku, Shinji Oikawa, Yingxi Mo in Taurine 11 (2019)

  19. No Access

    Chapter and Conference Paper

    Taurine Promotes In-vitro Follicle Development, Oocyte Maturation, Fertilization and Cleavage of rats

    It is well known that a large quantity of taurine is present in mammalian ovaries. Taurine reportedly promotes the secretion of female reproductive hormones by stimulating hypothalamus-pituitary-gonadal axis f...

    Teng Mu, Ying Feng, Yuchen Che, Qiufeng Lv, Jianmin Hu, Qunhui Yang in Taurine 11 (2019)

  20. No Access

    Chapter and Conference Paper

    Taurine Prevents the Electrical Remodeling in Ach-CaCl2 Induced Atrial Fibrillation in Rats

    Objective: To study the preventive actions and mechanism of taurine on the electrical remodeling in atrial fibrillation (AF) rats. Methods: Male Wistar rats were injected with the mixture of acetylcholine (Ach) ...

    Qunhui Yang, Qiufeng Lv, Man Feng, Mei Liu, Ying Feng, Shumei Lin in Taurine 10 (2017)

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