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  1. No Access

    Chapter and Conference Paper

    Over-and-Under Complete Convolutional RNN for MRI Reconstruction

    Reconstructing magnetic resonance (MR) images from under-sampled data is a challenging problem due to various artifacts introduced by the under-sampling operation. Recent deep learning-based methods for MR ima...

    Pengfei Guo, Jeya Maria Jose Valanarasu in Medical Image Computing and Computer Assis… (2021)

  2. No Access

    Chapter and Conference Paper

    Hydranet: Data Augmentation for Regression Neural Networks

    Deep learning techniques are often criticized to heavily depend on a large quantity of labeled data. This problem is even more challenging in medical image analysis where the annotator expertise is often scar...

    Florian Dubost, Gerda Bortsova, Hieab Adams in Medical Image Computing and Computer Assis… (2019)

  3. No Access

    Chapter and Conference Paper

    Generative Adversarial Network for Segmentation of Motion Affected Neonatal Brain MRI

    Automatic neonatal brain tissue segmentation in preterm born infants is a prerequisite for evaluation of brain development. However, automatic segmentation is often hampered by motion artifacts caused by infan...

    N. Khalili, E. Turk, M. Zreik in Medical Image Computing and Computer Assis… (2019)

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    Chapter and Conference Paper

    Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked Slices

    In this paper, we present a fully convolutional densely connected network (Tiramisu) for multiple sclerosis (MS) lesion segmentation. Different from existing methods, we use stacked slices from all three anato...

    Huahong Zhang, Alessandra M. Valcarcel in Medical Image Computing and Computer Assis… (2019)

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    Chapter and Conference Paper

    Optimal Experimental Design for Biophysical Modelling in Multidimensional Diffusion MRI

    Computational models of biophysical tissue properties have been widely used in diffusion MRI (dMRI) research to elucidate the link between microstructural properties and MR signal formation. For brain tissue,...

    Santiago Coelho, Jose M. Pozo in Medical Image Computing and Computer Assis… (2019)

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    Chapter and Conference Paper

    Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network

    Localization of focal vascular lesions on brain MRI is an important component of research on the etiology of neurological disorders. However, manual annotation of lesions can be challenging, time-consuming an...

    Kimberlin M. H. van Wijnen, Florian Dubost in Medical Image Computing and Computer Assis… (2019)

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    Chapter and Conference Paper

    Variational AutoEncoder for Regression: Application to Brain Aging Analysis

    While unsupervised variational autoencoders (VAE) have become a powerful tool in neuroimage analysis, their application to supervised learning is under-explored. We aim to close this gap by proposing a unified...

    Qingyu Zhao, Ehsan Adeli, Nicolas Honnorat in Medical Image Computing and Computer Assis… (2019)

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    Chapter and Conference Paper

    Automatic Paraspinal Muscle Segmentation in Patients with Lumbar Pathology Using Deep Convolutional Neural Network

    Recent evidence suggests an association between low back pain (LBP) and changes in lumbar paraspinal muscle morphology and composition (i.e., fatty infiltration). Quantitative measurements of muscle cross-sect...

    Wenyao **a, Maryse Fortin, Joshua Ahn in Medical Image Computing and Computer Assis… (2019)

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    Chapter and Conference Paper

    Building an Ensemble of Complementary Segmentation Methods by Exploiting Probabilistic Estimates

    Two common ways of approaching atlas-based segmentation of brain MRI are (1) intensity-based modelling and (2) multi-atlas label fusion. Intensity-based methods are robust to registration errors but need disti...

    Gerard Sanroma, Oualid M. Benkarim, Gemma Piella in Machine Learning in Medical Imaging (2016)

  10. Chapter and Conference Paper

    Photoacoustic Imaging Paradigm Shift: Towards Using Vendor-Independent Ultrasound Scanners

    Photoacoustic (PA) imaging requires channel data acquisition synchronized with a laser firing system. Unfortunately, the access to these channel data is only available on specialized research systems, and most...

    Haichong K. Zhang, **aoyu Guo in Medical Image Computing and Computer-Assis… (2016)

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    Chapter and Conference Paper

    Class-Driven Color Transformation for Semantic Labeling

    We propose a novel class-driven color transformation aimed at semantic labeling. In contrast with other approaches elsewhere in the literature, our approach is a supervised one employing class information to l...

    Arash Shahriari, Jose M. Alvarez, Antonio Robles-Kelly in Computer Vision -- ACCV 2014 (2015)

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    Chapter and Conference Paper

    Element Stiffness Matrix Integration in Image-Based Cartesian Grid Finite Element Method

    Patient specific Finite Element (FE) simulations are usually expensive. Time consuming geometry creation procedures are normally necessary to use standard FE meshing software, while direct pixel-based meshing ...

    Luca Giovannelli, Juan J. Ródenas in Computational Modeling of Objects Presente… (2014)

  13. Chapter and Conference Paper

    Estimating Anatomically-Correct Reference Model for Craniomaxillofacial Deformity via Sparse Representation

    The success of craniomaxillofacial (CMF) surgery depends not only on the surgical techniques, but also upon an accurate surgical planning. However, surgical planning for CMF surgery is challenging due to the a...

    Yi Ren, Li Wang, Yaozong Gao, Zhen Tang in Medical Image Computing and Computer-Assis… (2014)

  14. Chapter and Conference Paper

    Active Echo: A New Paradigm for Ultrasound Calibration

    In ultrasound-guided medical procedures, accurate tracking of interventional tools with respect to the US probe is crucial to patient safety and clinical outcome. US probe tracking requires an unavoidable cali...

    **aoyu Guo, Alexis Cheng, Haichong K. Zhang in Medical Image Computing and Computer-Assis… (2014)

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    Chapter and Conference Paper

    A Computer Assisted Planning System for the Placement of sEEG Electrodes in the Treatment of Epilepsy

    Approximately 20–30% of patients with focal epilepsy are medically refractory and may be candidates for curative surgery. Stereo EEG is the placement of multiple depth electrodes into the brain to record seizu...

    G. Zombori, R. Rodionov, M. Nowell in Information Processing in Computer-Assiste… (2014)

  16. No Access

    Chapter and Conference Paper

    Network-Guided Group Feature Selection for Classification of Autism Spectrum Disorder

    We present an anatomically guided feature selection scheme for prediction of neurological disorders based on brain connectivity networks. Using anatomical information not only gives rise to an interpretable mo...

    Veronika Cheplygina, David M. J. Tax, Marco Loog in Machine Learning in Medical Imaging (2014)

  17. No Access

    Chapter and Conference Paper

    Matched Signal Detection on Graphs: Theory and Application to Brain Network Classification

    We develop a matched signal detection (MSD) theory for signals with an intrinsic structure described by a weighted graph. Hypothesis tests are formulated under different signal models. In the simplest scenario...

    Chenhui Hu, Lin Cheng, Jorge Sepulcre in Information Processing in Medical Imaging (2013)

  18. Chapter and Conference Paper

    Hierarchical Structural Map** for Globally Optimized Estimation of Functional Networks

    In this study, we propose a framework to map functional MRI (fMRI) activation signals using DTI-tractography. This framework, which we term functional by structural hierarchical (FSH) map**, models the regio...

    Alex D. Leow, Liang Zhan, Donatello Arienzo in Medical Image Computing and Computer-Assis… (2012)

  19. Chapter and Conference Paper

    Direct 3D Ultrasound to Video Registration Using Photoacoustic Effect

    Interventional guidance systems require surgical navigation systems to register different tools and devices together. Standard navigation systems have various drawbacks leading to target registration errors (T...

    Alexis Cheng, ** U. Kang, Russell H. Taylor in Medical Image Computing and Computer-Assis… (2012)

  20. No Access

    Chapter and Conference Paper

    Amygdala Surface Modeling with Weighted Spherical Harmonics

    Although there are numerous publications on amygdala volumetry, so far there has not been many studies on modeling local amygdala surface shape variations in a rigorous framework. This paper present a systemat...

    Moo K. Chung, Brendon M. Nacewicz, Shubing Wang in Medical Imaging and Augmented Reality (2008)

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