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  1. No Access

    Chapter and Conference Paper

    ContraReg: Contrastive Learning of Multi-modality Unsupervised Deformable Image Registration

    Establishing voxelwise semantic correspondence across distinct imaging modalities is a foundational yet formidable computer vision task. Current multi-modality registration techniques maximize hand-crafted int...

    Neel Dey, Jo Schlemper in Medical Image Computing and Computer Assis… (2022)

  2. No Access

    Chapter and Conference Paper

    Evaluation of the Robustness of Learned MR Image Reconstruction to Systematic Deviations Between Training and Test Data for the Models from the fastMRI Challenge

    The 2019 fastMRI challenge was an open challenge designed to advance research in the field of machine learning for MR image reconstruction. The goal for the participants was to reconstruct undersampled MRI k-spac...

    Patricia M. Johnson, Geunu Jeong in Machine Learning for Medical Image Reconst… (2021)

  3. No Access

    Chapter and Conference Paper

    Deep Learning for Cardiac Motion Estimation: Supervised vs. Unsupervised Training

    Deep learning based registration methods have emerged as alternatives to traditional registration methods, with competitive accuracy and significantly less runtime. Two different strategies have been proposed ...

    Huaqi Qiu, Chen Qin, Loic Le Folgoc in Statistical Atlases and Computational Mode… (2020)

  4. No Access

    Chapter and Conference Paper

    Unsupervised Multi-modal Style Transfer for Cardiac MR Segmentation

    In this work, we present a fully automatic method to segment cardiac structures from late-gadolinium enhanced (LGE) images without using labelled LGE data for training, but instead by transferring the anatomic...

    Chen Chen, Cheng Ouyang, Giacomo Tarroni in Statistical Atlases and Computational Mode… (2020)

  5. No Access

    Chapter and Conference Paper

    Nonuniform Variational Network: Deep Learning for Accelerated Nonuniform MR Image Reconstruction

    Deep learning for accelerated magnetic resonance (MR) image reconstruction is a fast growing field, which has so far shown promising results. However, most works are limited in the sense that they assume equi...

    Jo Schlemper, Seyed Sadegh Mohseni Salehi in Medical Image Computing and Computer Assis… (2019)

  6. No Access

    Chapter and Conference Paper

    k-t NEXT: Dynamic MR Image Reconstruction Exploiting Spatio-Temporal Correlations

    Dynamic magnetic resonance imaging (MRI) exhibits high correlations in k-space and time. In order to accelerate the dynamic MR imaging and to exploit k-t correlations from highly undersampled data, here we propos...

    Chen Qin, Jo Schlemper, **ming Duan in Medical Image Computing and Computer Assis… (2019)

  7. No Access

    Chapter and Conference Paper

    Exploiting Motion for Deep Learning Reconstruction of Extremely-Undersampled Dynamic MRI

    The problem of accelerated acquisition for dynamic MRI has been recently tackled with deep learning techniques. However, current state-of-the-art approaches do not incorporate a strategy to exploit the full t...

    Gavin Seegoolam, Jo Schlemper, Chen Qin in Medical Image Computing and Computer Assis… (2019)

  8. No Access

    Chapter and Conference Paper

    VS-Net: Variable Splitting Network for Accelerated Parallel MRI Reconstruction

    In this work, we propose a deep learning approach for parallel magnetic resonance imaging (MRI) reconstruction, termed a variable splitting network (VS-Net), for an efficient, high-quality reconstruction of un...

    **ming Duan, Jo Schlemper, Chen Qin in Medical Image Computing and Computer Assis… (2019)

  9. Chapter and Conference Paper

    Adversarial and Perceptual Refinement for Compressed Sensing MRI Reconstruction

    Deep learning approaches have shown promising performance for compressed sensing-based Magnetic Resonance Imaging. While deep neural networks trained with mean squared error (MSE) loss functions can achieve hi...

    Maximilian Seitzer, Guang Yang, Jo Schlemper in Medical Image Computing and Computer Assis… (2018)

  10. Chapter and Conference Paper

    Bayesian Deep Learning for Accelerated MR Image Reconstruction

    Recently, many deep learning (DL) based MR image reconstruction methods have been proposed with promising results. However, only a handful of work has been focussing on characterising the behaviour of deep networ...

    Jo Schlemper, Daniel C. Castro, Wenjia Bai in Machine Learning for Medical Image Reconst… (2018)

  11. No Access

    Chapter and Conference Paper

    Combining Deep Learning and Shape Priors for Bi-Ventricular Segmentation of Volumetric Cardiac Magnetic Resonance Images

    In this paper, we combine a network-based method with image registration to develop a shape-based bi-ventricular segmentation tool for short-axis cardiac magnetic resonance (CMR) volumetric images. The method ...

    **ming Duan, Jo Schlemper, Wenjia Bai, Timothy J. W. Dawes in Shape in Medical Imaging (2018)

  12. Chapter and Conference Paper

    Deep Nested Level Sets: Fully Automated Segmentation of Cardiac MR Images in Patients with Pulmonary Hypertension

    In this paper we introduce a novel and accurate optimisation method for segmentation of cardiac MR (CMR) images in patients with pulmonary hypertension (PH). The proposed method explicitly takes into account t...

    **ming Duan, Jo Schlemper, Wenjia Bai in Medical Image Computing and Computer Assis… (2018)

  13. Chapter and Conference Paper

    Cardiac MR Segmentation from Undersampled k-space Using Deep Latent Representation Learning

    Reconstructing magnetic resonance imaging (MRI) from undersampled k-space enables the accelerated acquisition of MRI but is a challenging problem. However, in many diagnostic scenarios, perfect reconstructions ar...

    Jo Schlemper, Ozan Oktay, Wenjia Bai in Medical Image Computing and Computer Assis… (2018)

  14. Chapter and Conference Paper

    Joint Motion Estimation and Segmentation from Undersampled Cardiac MR Image

    Accelerating the acquisition of magnetic resonance imaging (MRI) is a challenging problem, and many works have been proposed to reconstruct images from undersampled k-space data. However, if the main purpose is t...

    Chen Qin, Wenjia Bai, Jo Schlemper in Machine Learning for Medical Image Reconst… (2018)

  15. Chapter and Conference Paper

    Stochastic Deep Compressive Sensing for the Reconstruction of Diffusion Tensor Cardiac MRI

    Understanding the structure of the heart at the microscopic scale of cardiomyocytes and their aggregates provides new insights into the mechanisms of heart disease and enables the investigation of effective th...

    Jo Schlemper, Guang Yang, Pedro Ferreira in Medical Image Computing and Computer Assis… (2018)

  16. Chapter and Conference Paper

    Joint Learning of Motion Estimation and Segmentation for Cardiac MR Image Sequences

    Cardiac motion estimation and segmentation play important roles in quantitatively assessing cardiac function and diagnosing cardiovascular diseases. In this paper, we propose a novel deep learning method for j...

    Chen Qin, Wenjia Bai, Jo Schlemper in Medical Image Computing and Computer Assis… (2018)

  17. No Access

    Chapter and Conference Paper

    A Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction

    The acquisition of Magnetic Resonance Imaging (MRI) is inherently slow. Inspired by recent advances in deep learning, we propose a framework for reconstructing MR images from undersampled data using a deep cas...

    Jo Schlemper, Jose Caballero, Joseph V. Hajnal in Information Processing in Medical Imaging (2017)