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  1. No Access

    Chapter and Conference Paper

    Continual Active Learning for Efficient Adaptation of Machine Learning Models to Changing Image Acquisition

    Imaging in clinical routine is subject to changing scanner protocols, hardware, or policies in a typically heterogeneous set of acquisition hardware. Accuracy and reliability of deep learning models suffer fro...

    Matthias Perkonigg, Johannes Hofmanninger in Information Processing in Medical Imaging (2021)

  2. No Access

    Chapter and Conference Paper

    Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI

    The performance of deep neural networks typically increases with the number of training images. However, not all images have the same importance towards improved performance and robustness. In fetal brain MRI,...

    Lucas Fidon, Michael Aertsen, Nada Mufti in Uncertainty for Safe Utilization of Machin… (2021)

  3. No Access

    Chapter and Conference Paper

    Dynamic Memory to Alleviate Catastrophic Forgetting in Continuous Learning Settings

    In medical imaging, technical progress or changes in diagnostic procedures lead to a continuous change in image appearance. Scanner manufacturer, reconstruction kernel, dose, other protocol specific settings o...

    Johannes Hofmanninger, Matthias Perkonigg in Medical Image Computing and Computer Assis… (2020)

  4. Chapter and Conference Paper

    Detecting Bone Lesions in Multiple Myeloma Patients Using Transfer Learning

    The detection of bone lesions is important for the diagnosis and staging of multiple myeloma patients. The scarce availability of annotated data renders training of automated detectors challenging. Here, we pr...

    Matthias Perkonigg, Johannes Hofmanninger in Data Driven Treatment Response Assessment … (2018)

  5. Chapter and Conference Paper

    Predicting Future Bone Infiltration Patterns in Multiple Myeloma

    Multiple Myeloma (MM) is a bone marrow malignancy affecting the generation pathway of plasma cells and B-lymphocytes. It results in their uncontrolled proliferation and malignant transformation and ultimately ...

    Roxane Licandro, Johannes Hofmanninger in Patch-Based Techniques in Medical Imaging (2018)

  6. Chapter

    Ethical and Privacy Aspects of Using Medical Image Data

    This chapter describes the ethical and privacy aspects of using medical data in the context of the VISCERAL project. The project had as main goals the creation of a benchmark for organ segmentation, landmark d...

    Katharina Grünberg, Andras Jakab in Cloud-Based Benchmarking of Medical Image … (2017)

  7. Chapter

    Datasets Created in VISCERAL

    In the VISCERAL project, several Gold Corpus datasets containing medical imaging data and corresponding manual expert annotations have been created. These datasets were used for training and evaluation of partici...

    Markus Krenn, Katharina Grünberg in Cloud-Based Benchmarking of Medical Image … (2017)

  8. No Access

    Chapter and Conference Paper

    Assessing Reorganisation of Functional Connectivity in the Infant Brain

    As maturation of neural networks continues throughout childhood, brain lesions insulting immature networks have different impact on brain function than lesions obtained after full network maturation. Thus, lon...

    Roxane Licandro, Karl-Heinz Nenning in Fetal, Infant and Ophthalmic Medical Image… (2017)

  9. Chapter

    Retrieval of Medical Cases for Diagnostic Decisions: VISCERAL Retrieval Benchmark

    Health providers currently construct their differential diagnosis for a given medical case most often based on textbook knowledge and clinical experience. Data mining of the large amount of medical records gen...

    Oscar Jimenez-del-Toro, Henning Müller in Cloud-Based Benchmarking of Medical Image … (2017)

  10. No Access

    Chapter and Conference Paper

    Map** Multi-Modal Routine Imaging Data to a Single Reference via Multiple Templates

    Population level analysis of medical imaging data relies on finding spatial correspondence across individuals as a basis for local comparison of visual characteristics. Here, we describe and evaluate a framewo...

    Johannes Hofmanninger, Bjoern Menze in Deep Learning in Medical Image Analysis an… (2017)

  11. No Access

    Chapter and Conference Paper

    Multivariate Manifold Modelling of Functional Connectivity in Develo** Language Networks

    There is an increasing consensus in the scientific and medical communtities that functional brain analysis should be conducted from a connectionist standpoint. Most connectivity studies to date rely on derived...

    Ernst Schwartz, Karl-Heinz Nenning in Information Processing in Medical Imaging (2017)

  12. No Access

    Chapter and Conference Paper

    Unsupervised Anomaly Detection with Generative Adversarial Networks to Guide Marker Discovery

    Obtaining models that capture imaging markers relevant for disease progression and treatment monitoring is challenging. Models are typically based on large amounts of data with annotated examples of known mark...

    Thomas Schlegl, Philipp Seeböck in Information Processing in Medical Imaging (2017)

  13. Chapter

    Annotating Medical Image Data

    This chapter describes the annotation of the medical image data that were used in the VISCERAL project. Annotation of regions in the 3D images is non-trivial, and tools need to be chosen to limit the manual wo...

    Katharina Grünberg, Oscar Jimenez-del-Toro in Cloud-Based Benchmarking of Medical Image … (2017)

  14. No Access

    Chapter and Conference Paper

    Overview of the 2015 Workshop on Medical Computer Vision — Algorithms for Big Data (MCV 2015)

    The 2015 workshop on medical computer vision (MCV): algorithms for big data took place in Munich, Germany, in connection with MICCAI (Medical Image Computing for Computer Assisted Intervention). It is the fift...

    Henning Müller, Bjoern Menze, Georg Langs in Medical Computer Vision: Algorithms for Bi… (2016)

  15. Chapter and Conference Paper

    Unsupervised Identification of Clinically Relevant Clusters in Routine Imaging Data

    A key question in learning from clinical routine imaging data is whether we can identify coherent patterns that re-occur across a population, and at the same time are linked to clinically relevant patient para...

    Johannes Hofmanninger, Markus Krenn in Medical Image Computing and Computer-Assis… (2016)

  16. Chapter and Conference Paper

    Modeling Fetal Cortical Expansion Using Graph-Regularized Gompertz Models

    Understanding patterns of brain development before birth is of both high clinical and scientific interest. However, despite advances in reconstruction methods, the challenging setting of in-utero imaging rende...

    Ernst Schwartz, Gregor Kasprian in Medical Image Computing and Computer-Assis… (2016)

  17. No Access

    Chapter and Conference Paper

    Creating a Large-Scale Silver Corpus from Multiple Algorithmic Segmentations

    Currently, increasingly large medical imaging data sets become available for research and are analysed by a range of algorithms segmenting anatomical structures automatically and interactively. While they prov...

    Markus Krenn, Matthias Dorfer in Medical Computer Vision: Algorithms for Bi… (2016)

  18. No Access

    Chapter and Conference Paper

    A Locally Linear Method for Enforcing Temporal Smoothness in Serial Image Registration

    Deformation fields obtained from image registration are commonly used for deriving measurements of morphological changes between reference and follow-up images. As the underlying image matching problem is ill-...

    Ernst Schwartz, Andras Jakab in Spatio-temporal Image Analysis for Longitu… (2015)

  19. No Access

    Chapter and Conference Paper

    Overview of the VISCERAL Retrieval Benchmark 2015

    The results of the VISCERAL 3D case retrieval benchmark were presented during the Multimodal Retrieval in the Medical Domain (MRMD) 2015 workshop in Vienna, Austria on March 29, 2015. The main task for the par...

    Oscar Alfonso Jiménez–del–Toro, Allan Hanbury in Multimodal Retrieval in the Medical Domain (2015)

  20. Chapter and Conference Paper

    Predicting Activation Across Individuals with Resting-State Functional Connectivity Based Multi-Atlas Label Fusion

    The alignment of brain imaging data for functional neuroimaging studies is challenging due to the discrepancy between correspondence of morphology, and equivalence of functional role. In this paper we map func...

    Georg Langs, Polina Golland in Medical Image Computing and Computer-Assis… (2015)

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