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  1. No Access

    Chapter and Conference Paper

    Spatio-Temporal Motion Correction and Iterative Reconstruction of In-Utero Fetal fMRI

    Resting-state functional Magnetic Resonance Imaging (fMRI) is a powerful imaging technique for studying functional development of the brain in utero. However, unpredictable and excessive movement of fetuses have ...

    Athena Taymourtash, Hamza Kebiri in Medical Image Computing and Computer Assis… (2022)

  2. No Access

    Chapter and Conference Paper

    Identifying Phenotypic Concepts Discriminating Molecular Breast Cancer Sub-Types

    Molecular breast cancer sub-types derived from core-biopsy are central for individual outcome prediction and treatment decisions. Determining sub-types by non-invasive imaging procedures would benefit early as...

    Christoph Fürböck, Matthias Perkonigg in Medical Image Computing and Computer Assis… (2022)

  3. No Access

    Chapter and Conference Paper

    Continual Active Learning for Efficient Adaptation of Machine Learning Models to Changing Image Acquisition

    Imaging in clinical routine is subject to changing scanner protocols, hardware, or policies in a typically heterogeneous set of acquisition hardware. Accuracy and reliability of deep learning models suffer fro...

    Matthias Perkonigg, Johannes Hofmanninger in Information Processing in Medical Imaging (2021)

  4. No Access

    Chapter and Conference Paper

    Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI

    The performance of deep neural networks typically increases with the number of training images. However, not all images have the same importance towards improved performance and robustness. In fetal brain MRI,...

    Lucas Fidon, Michael Aertsen, Nada Mufti in Uncertainty for Safe Utilization of Machin… (2021)

  5. No Access

    Chapter and Conference Paper

    Dynamic Memory to Alleviate Catastrophic Forgetting in Continuous Learning Settings

    In medical imaging, technical progress or changes in diagnostic procedures lead to a continuous change in image appearance. Scanner manufacturer, reconstruction kernel, dose, other protocol specific settings o...

    Johannes Hofmanninger, Matthias Perkonigg in Medical Image Computing and Computer Assis… (2020)

  6. No Access

    Chapter

    Computer-Assisted Quantification

    Computer-aided image analysis and decision support has become an indispensable part of treatment planning in orthopaedic surgery and in osteology. The first use of computers for image interpretation probably w...

    Philipp Peloschek, Georg Langs in Measurements in Musculoskeletal Radiology (2020)

  7. No Access

    Chapter and Conference Paper

    Quantifying Residual Motion Artifacts in Fetal fMRI Data

    Fetal functional Magnetic Resonance Imaging (fMRI) has emerged as a powerful tool for investigating brain development in utero, holding promise for generating developmental disease biomarkers and supporting p...

    Athena Taymourtash, Ernst Schwartz in Smart Ultrasound Imaging and Perinatal, Pr… (2019)

  8. No Access

    Chapter and Conference Paper

    Reproducibility of Functional Connectivity Estimates in Motion Corrected Fetal fMRI

    Preprocessing and motion correction are essential steps in resting state functional Magnetic Resonance Imaging (rs-fMRI) of the fetal brain. They aim to address the difficult task of removing artefacts caused...

    Daniel Sobotka, Roxane Licandro in Smart Ultrasound Imaging and Perinatal, Pr… (2019)

  9. Chapter and Conference Paper

    Detecting Bone Lesions in Multiple Myeloma Patients Using Transfer Learning

    The detection of bone lesions is important for the diagnosis and staging of multiple myeloma patients. The scarce availability of annotated data renders training of automated detectors challenging. Here, we pr...

    Matthias Perkonigg, Johannes Hofmanninger in Data Driven Treatment Response Assessment … (2018)

  10. Chapter and Conference Paper

    Predicting Future Bone Infiltration Patterns in Multiple Myeloma

    Multiple Myeloma (MM) is a bone marrow malignancy affecting the generation pathway of plasma cells and B-lymphocytes. It results in their uncontrolled proliferation and malignant transformation and ultimately ...

    Roxane Licandro, Johannes Hofmanninger in Patch-Based Techniques in Medical Imaging (2018)

  11. Chapter

    Ethical and Privacy Aspects of Using Medical Image Data

    This chapter describes the ethical and privacy aspects of using medical data in the context of the VISCERAL project. The project had as main goals the creation of a benchmark for organ segmentation, landmark d...

    Katharina Grünberg, Andras Jakab in Cloud-Based Benchmarking of Medical Image … (2017)

  12. Chapter

    Datasets Created in VISCERAL

    In the VISCERAL project, several Gold Corpus datasets containing medical imaging data and corresponding manual expert annotations have been created. These datasets were used for training and evaluation of partici...

    Markus Krenn, Katharina Grünberg in Cloud-Based Benchmarking of Medical Image … (2017)

  13. No Access

    Chapter and Conference Paper

    Assessing Reorganisation of Functional Connectivity in the Infant Brain

    As maturation of neural networks continues throughout childhood, brain lesions insulting immature networks have different impact on brain function than lesions obtained after full network maturation. Thus, lon...

    Roxane Licandro, Karl-Heinz Nenning in Fetal, Infant and Ophthalmic Medical Image… (2017)

  14. Chapter

    Retrieval of Medical Cases for Diagnostic Decisions: VISCERAL Retrieval Benchmark

    Health providers currently construct their differential diagnosis for a given medical case most often based on textbook knowledge and clinical experience. Data mining of the large amount of medical records gen...

    Oscar Jimenez-del-Toro, Henning Müller in Cloud-Based Benchmarking of Medical Image … (2017)

  15. No Access

    Chapter and Conference Paper

    Map** Multi-Modal Routine Imaging Data to a Single Reference via Multiple Templates

    Population level analysis of medical imaging data relies on finding spatial correspondence across individuals as a basis for local comparison of visual characteristics. Here, we describe and evaluate a framewo...

    Johannes Hofmanninger, Bjoern Menze in Deep Learning in Medical Image Analysis an… (2017)

  16. No Access

    Chapter and Conference Paper

    Multivariate Manifold Modelling of Functional Connectivity in Develo** Language Networks

    There is an increasing consensus in the scientific and medical communtities that functional brain analysis should be conducted from a connectionist standpoint. Most connectivity studies to date rely on derived...

    Ernst Schwartz, Karl-Heinz Nenning in Information Processing in Medical Imaging (2017)

  17. No Access

    Chapter and Conference Paper

    Unsupervised Anomaly Detection with Generative Adversarial Networks to Guide Marker Discovery

    Obtaining models that capture imaging markers relevant for disease progression and treatment monitoring is challenging. Models are typically based on large amounts of data with annotated examples of known mark...

    Thomas Schlegl, Philipp Seeböck in Information Processing in Medical Imaging (2017)

  18. Chapter

    Annotating Medical Image Data

    This chapter describes the annotation of the medical image data that were used in the VISCERAL project. Annotation of regions in the 3D images is non-trivial, and tools need to be chosen to limit the manual wo...

    Katharina Grünberg, Oscar Jimenez-del-Toro in Cloud-Based Benchmarking of Medical Image … (2017)

  19. No Access

    Chapter and Conference Paper

    Overview of the 2015 Workshop on Medical Computer Vision — Algorithms for Big Data (MCV 2015)

    The 2015 workshop on medical computer vision (MCV): algorithms for big data took place in Munich, Germany, in connection with MICCAI (Medical Image Computing for Computer Assisted Intervention). It is the fift...

    Henning Müller, Bjoern Menze, Georg Langs in Medical Computer Vision: Algorithms for Bi… (2016)

  20. Chapter and Conference Paper

    Unsupervised Identification of Clinically Relevant Clusters in Routine Imaging Data

    A key question in learning from clinical routine imaging data is whether we can identify coherent patterns that re-occur across a population, and at the same time are linked to clinically relevant patient para...

    Johannes Hofmanninger, Markus Krenn in Medical Image Computing and Computer-Assis… (2016)

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