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  1. No Access

    Chapter and Conference Paper

    Self-supervised Longitudinal Neighbourhood Embedding

    Longitudinal MRIs are often used to capture the gradual deterioration of brain structure and function caused by aging or neurological diseases. Analyzing this data via machine learning generally requires a lar...

    Jiahong Ouyang, Qingyu Zhao, Ehsan Adeli in Medical Image Computing and Computer Assis… (2021)

  2. No Access

    Chapter and Conference Paper

    Representation Disentanglement for Multi-modal Brain MRI Analysis

    Multi-modal MRIs are widely used in neuroimaging applications since different MR sequences provide complementary information about brain structures. Recent works have suggested that multi-modal deep learning a...

    Jiahong Ouyang, Ehsan Adeli, Kilian M. Pohl in Information Processing in Medical Imaging (2021)

  3. No Access

    Chapter and Conference Paper

    Longitudinal Correlation Analysis for Decoding Multi-modal Brain Development

    Starting from childhood, the human brain restructures and rewires throughout life. Characterizing such complex brain development requires effective analysis of longitudinal and multi-modal neuroimaging data. H...

    Qingyu Zhao, Ehsan Adeli, Kilian M. Pohl in Medical Image Computing and Computer Assis… (2021)

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    Chapter and Conference Paper

    Going Beyond Saliency Maps: Training Deep Models to Interpret Deep Models

    Interpretability is a critical factor in applying complex deep learning models to advance the understanding of brain disorders in neuroimaging studies. To interpret the decision process of a trained classifier...

    Zixuan Liu, Ehsan Adeli, Kilian M. Pohl in Information Processing in Medical Imaging (2021)

  5. No Access

    Chapter and Conference Paper

    Spatio-Temporal Graph Convolution for Resting-State fMRI Analysis

    The Blood-Oxygen-Level-Dependent (BOLD) signal of resting-state fMRI (rs-fMRI) records the temporal dynamics of intrinsic functional networks in the brain. However, existing deep learning methods applied to rs...

    Soham Gadgil, Qingyu Zhao, Adolf Pfefferbaum in Medical Image Computing and Computer Assis… (2020)

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    Chapter and Conference Paper

    Vision-Based Estimation of MDS-UPDRS Gait Scores for Assessing Parkinson’s Disease Motor Severity

    Parkinson’s disease (PD) is a progressive neurological disorder primarily affecting motor function resulting in tremor at rest, rigidity, bradykinesia, and postural instability. The physical severity of PD imp...

    Mandy Lu, Kathleen Poston, Adolf Pfefferbaum in Medical Image Computing and Computer Assis… (2020)

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    Chapter and Conference Paper

    Confounder-Aware Visualization of ConvNets

    With recent advances in deep learning, neuroimaging studies increasingly rely on convolutional networks (ConvNets) to predict diagnosis based on MR images. To gain a better understanding of how a disease impac...

    Qingyu Zhao, Ehsan Adeli, Adolf Pfefferbaum in Machine Learning in Medical Imaging (2019)

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    Chapter and Conference Paper

    Variational AutoEncoder for Regression: Application to Brain Aging Analysis

    While unsupervised variational autoencoders (VAE) have become a powerful tool in neuroimage analysis, their application to supervised learning is under-explored. We aim to close this gap by proposing a unified...

    Qingyu Zhao, Ehsan Adeli, Nicolas Honnorat in Medical Image Computing and Computer Assis… (2019)

  9. No Access

    Chapter and Conference Paper

    Data Augmentation Based on Substituting Regional MRIs Volume Scores

    Due to difficulties in collecting sufficient training data, recent advances in neural-network-based methods have not been fully explored in the analysis of brain Magnetic Resonance Imaging (MRI). A possible so...

    Tuo Leng, Qingyu Zhao, Chao Yang, Zhufu Lu in Large-Scale Annotation of Biomedical Data … (2019)

  10. No Access

    Chapter and Conference Paper

    Variational Autoencoder with Truncated Mixture of Gaussians for Functional Connectivity Analysis

    Resting-state functional connectivity states are often identified as clusters of dynamic connectivity patterns. However, existing clustering approaches do not distinguish major states from rarely occurring min...

    Qingyu Zhao, Nicolas Honnorat, Ehsan Adeli in Information Processing in Medical Imaging (2019)

  11. Chapter and Conference Paper

    Multi-label Transduction for Identifying Disease Comorbidity Patterns

    Study of the untoward effects associated with the comorbidity of multiple diseases on brain morphology requires identifying differences across multiple diagnostic grou**s. To identify such effects and differ...

    Ehsan Adeli, Dong** Kwon, Kilian M. Pohl in Medical Image Computing and Computer Assis… (2018)

  12. No Access

    Chapter and Conference Paper

    End-To-End Alzheimer’s Disease Diagnosis and Biomarker Identification

    As shown in computer vision, the power of deep learning lies in automatically learning relevant and powerful features for any perdition task, which is made possible through end-to-end architectures. However, d...

    Soheil Esmaeilzadeh, Dimitrios Ioannis Belivanis in Machine Learning in Medical Imaging (2018)

  13. Chapter and Conference Paper

    A Riemannian Framework for Longitudinal Analysis of Resting-State Functional Connectivity

    Even though the number of longitudinal resting-state-fMRI studies is increasing, accurately characterizing the changes in functional connectivity across visits is a largely unexplored topic. To improve charact...

    Qingyu Zhao, Dong** Kwon, Kilian M. Pohl in Medical Image Computing and Computer Assis… (2018)

  14. No Access

    Chapter and Conference Paper

    3D Motion Modeling and Reconstruction of Left Ventricle Wall in Cardiac MRI

    The analysis of left ventricle (LV) wall motion is a critical step for understanding cardiac functioning mechanisms and clinical diagnosis of ventricular diseases. We present a novel approach for 3D motion mod...

    Dong Yang, Pengxiang Wu, Chaowei Tan in Functional Imaging and Modelling of the He… (2017)

  15. Chapter and Conference Paper

    Joint Data Harmonization and Group Cardinality Constrained Classification

    To boost the power of classifiers, studies often increase the size of existing samples through the addition of independently collected data sets. Doing so requires harmonizing the data for demographic and acqu...

    Yong Zhang, Sang Hyun Park, Kilian M. Pohl in Medical Image Computing and Computer-Assis… (2016)

  16. Chapter and Conference Paper

    Solving Logistic Regression with Group Cardinality Constraints for Time Series Analysis

    We propose an algorithm to distinguish 3D+t images of healthy from diseased subjects by solving logistic regression based on cardinality constrained, group sparsity. This method reduces the risk of overfitting...

    Yong Zhang, Kilian M. Pohl in Medical Image Computing and Computer-Assis… (2015)

  17. Chapter and Conference Paper

    FLOOR: Fusing Locally Optimal Registrations

    Most registration algorithms, such as Demons [1], align two scans by iteratively finding the deformation minimizing the image dissimilarity at each location and smoothing this minimum across the image domain. ...

    Dong Hye Ye, Jihun Hamm, Benoit Desjardins in Medical Image Computing and Computer-Assis… (2013)

  18. Chapter and Conference Paper

    Collaborative Multi Organ Segmentation by Integrating Deformable and Graphical Models

    Organ segmentation is a challenging problem on which significant progress has been made. Deformable models (DM) and graphical models (GM) are two important categories of optimization based image segmentation m...

    Mustafa Gökhan Uzunbaş, Chao Chen in Medical Image Computing and Computer-Assis… (2013)

  19. No Access

    Chapter and Conference Paper

    Extracting Evolving Pathologies via Spectral Clustering

    A bottleneck in the analysis of longitudinal MR scans with white matter brain lesions is the temporally consistent segmentation of the pathology. We identify pathologies in 3D+t(ime) within a spectral graph cl...

    Elena Bernardis, Kilian M. Pohl in Information Processing in Medical Imaging (2013)

  20. No Access

    Chapter and Conference Paper

    Multinomial Probabilistic Fiber Representation for Connectivity Driven Clustering

    The clustering of fibers into bundles is an important task in studying the structure and function of white matter. Existing technology mostly relies on geometrical features, such as the shape of fibers, and th...

    Birkan Tunç, Alex R. Smith, Demian Wasserman in Information Processing in Medical Imaging (2013)

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