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  1. Signal drift in diffusion MRI of the brain: effects on intravoxel incoherent motion parameter estimates

    Objectives

    Signal drift has been put forward as one of the fundamental confounding factors in diffusion MRI (dMRI) of the brain. This study...

    Oscar Jalnefjord, Louise Rosenqvist, ... Isabella M. Björkman-Burtscher in Magnetic Resonance Materials in Physics, Biology and Medicine
    Article Open access 13 July 2024
  2. Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index

    Motivation

    Alignment of reads to a reference genome sequence is one of the key steps in the analysis of human whole-genome sequencing data obtained...

    Guguchkin Egor, Kasianov Artem, ... Karpulevich Evgeny in BMC Bioinformatics
    Article Open access 13 July 2024
  3. DQMMBSC: design of an augmented deep Q-learning model for mining optimisation in IIoT via hybrid-bioinspired blockchain shards and contextual consensus

    Single-chained blockchains are highly secure but cannot be scaled to larger IIoT (Internet of Industrial Things) network scenarios due to storage...

    Manisha Gokuldas Gedam, Swapnili Karmore in International Journal of Data Science and Analytics
    Article 13 July 2024
  4. Cancer mutationscape: revealing the link between modular restructuring and intervention efficacy among mutations

    There is increasing evidence that biological systems are modular in both structure and function. Complex biological signaling networks such as gene...

    Daniel Plaugher, David Murrugarra in npj Systems Biology and Applications
    Article Open access 13 July 2024
  5. Enhancing OCT patch-based segmentation with improved GAN data augmentation and semi-supervised learning

    For optimum performance, deep learning methods, such as those applied for retinal and choroidal layer segmentation in optical coherence tomography...

    Jason Kugelman, David Alonso-Caneiro, ... Michael J. Collins in Neural Computing and Applications
    Article Open access 13 July 2024
  6. Evolution of hadron therapy from 1935 to 2005: a personal view

    Introduction

    Hadron therapy is today an established modality in cancer radiation therapy that, world-wide, is available in about hundred centres....

    Ugo Amaldi in Health and Technology
    Article Open access 12 July 2024
  7. Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling

    Immunoglobulins (Ig), which exist either as B-cell receptors (BCR) on the surface of B cells or as antibodies when secreted, play a key role in the...

    Khang Lê Quý, Maria Chernigovskaya, ... Victor Greiff in npj Systems Biology and Applications
    Article Open access 12 July 2024
  8. METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data

    Background

    With the emergence of Oxford Nanopore technology, now the on-site sequencing of 16S rRNA from environments is available. Due to the error...

    Melcy Philip, Knut Rudi, ... Lars-Gustav Snipen in BMC Bioinformatics
    Article Open access 12 July 2024
  9. Improving laryngeal cancer detection using chaotic metaheuristics integration with squeeze-and-excitation resnet model

    Laryngeal cancer (LC) represents a substantial world health problem, with diminished survival rates attributed to late-stage diagnoses. Correct...

    Sana Alazwari, Mashael Maashi, ... Samah Al Zanin in Health Information Science and Systems
    Article 12 July 2024
  10. expHRD: an individualized, transcriptome-based prediction model for homologous recombination deficiency assessment in cancer

    Background

    Homologous recombination deficiency (HRD) stands as a clinical indicator for discerning responsive outcomes to platinum-based chemotherapy...

    Jae Jun Lee, Hyun Ju Kang, ... **ho Kim in BMC Bioinformatics
    Article Open access 12 July 2024
  11. How the brain can be trained to achieve an intermittent control strategy for stabilizing quiet stance by means of reinforcement learning

    The stabilization of human quiet stance is achieved by a combination of the intrinsic elastic properties of ankle muscles and an active closed-loop...

    Tomoki Takazawa, Yasuyuki Suzuki, ... Taishin Nomura in Biological Cybernetics
    Article Open access 12 July 2024
  12. Building RadiologyNET: an unsupervised approach to annotating a large-scale multimodal medical database

    Background

    The use of machine learning in medical diagnosis and treatment has grown significantly in recent years with the development of...

    Mateja Napravnik, Franko Hržić, ... Ivan Štajduhar in BioData Mining
    Article Open access 12 July 2024
  13. Anomaly analytics in data-driven machine learning applications

    Machine learning is used widely to create a range of prediction or classification models. The quality of the machine learning (ML) models depends not...

    Article Open access 12 July 2024
  14. Prediction method of pharmacokinetic parameters of small molecule drugs based on GCN network model

    Context

    Accurately predicting plasma protein binding rate (PPBR) and oral bioavailability (OBA) helps to better reveal the absorption and distribution...

    Zhihua Yang, Ying Wang, ... Wenhua Zhan in Journal of Molecular Modeling
    Article 12 July 2024
  15. Temporal analysis of computational economics: a topic modeling approach

    This study offers a comprehensive investigation into the thematic evolution within computational economics over the past two decades, leveraging...

    Malvika Mishra, Santosh Kumar Vishwakarma, ... S. Anjana in International Journal of Data Science and Analytics
    Article Open access 11 July 2024
  16. Characteristics of the Structural Connectivity in Patients with Brain Injury and Chronic Health Symptoms: A Pilot Study

    Diffusion properties from diffusion tensor imaging (DTI) are exquisitely sensitive to white matter abnormalities incurred during traumatic brain...

    **aojian Kang, Byung C. Yoon, ... Maheen M. Adamson in Neuroinformatics
    Article 11 July 2024
  17. Potential of V-Si72, V-C72, and V-Al36N36 as catalysts for oxygen reduction reaction

    Context

    The capacities of V-Si 72 , V-C 72 , and V-Al 36 N 36 nanocages to catalyze the ORR processes have been investigated. The acceptable pathways of ORR...

    Article 11 July 2024
  18. A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques

    Background

    The growing abundance of in vitro omics data, coupled with the necessity to reduce animal testing in the safety assessment of chemical...

    Louison Fresnais, Olivier Perin, ... Nathalie Poupin in BMC Bioinformatics
    Article Open access 11 July 2024
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