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  1. Increasing the efficiency of CRISPR/Cas9-mediated genome editing in the citrus postharvest pathogen Penicillium digitatum

    Background

    Penicillium digitatum is a fungal plant pathogen that causes the green mold disease in harvested citrus fruits. Due to its economical...

    Carolina Ropero-Pérez, Jose F. Marcos, ... Sandra Garrigues in Fungal Biology and Biotechnology
    Article Open access 13 July 2024
  2. Evaluation of heritability partitioning approaches in livestock populations

    Background

    Heritability partitioning approaches estimate the contribution of different functional classes, such as coding or regulatory variants, to...

    Can Yuan, José Luis Gualdrón Duarte, ... Tom Druet in BMC Genomics
    Article Open access 13 July 2024
  3. C4-like Sesuvium sesuvioides (Aizoaceae) exhibits CAM in cotyledons and putative C4-like + CAM metabolism in adult leaves as revealed by transcriptome analysis

    Background

    The co-occurrence of C 4 and CAM photosynthesis in a single species seems to be unusual and rare. This is likely due to the difficulty in...

    Christian Siadjeu, Gudrun Kadereit in BMC Genomics
    Article Open access 13 July 2024
  4. Effects of short-chain fatty acid-butyrate supplementation on expression of circadian-clock genes, sleep quality, and inflammation in patients with active ulcerative colitis: a double-blind randomized controlled trial

    Background

    The regulation of the circadian clock genes, which coordinate the activity of the immune system, is disturbed in inflammatory bowel disease...

    Donya Firoozi, Seyed Jalil Masoumi, ... Mahintaj Dara in Lipids in Health and Disease
    Article Open access 13 July 2024
  5. Biogeographical distribution and community assembly of Myxococcota in mangrove sediments

    Background

    Myxococcota, characterized by their distinct social lifestyles, are widely distributed micro-predators in global sediments. They can feed...

    Dayu Zou, Cui**g Zhang, ... Meng Li in Environmental Microbiome
    Article Open access 13 July 2024
  6. A novel deep-benthic sea cucumber species of Benthodytes (Holothuroidea, Elasipodida, Psychropotidae) and its comprehensive mitochondrial genome sequencing and evolutionary analysis

    Background

    The holothurians, commonly known as sea cucumbers, are marine organisms that possess significant dietary, nutritional, and medicinal value....

    Yingying He, Hancheng Zhao, ... **lai Miao in BMC Genomics
    Article Open access 13 July 2024
  7. Association between neutrophil to high-density lipoprotein cholesterol ratio (NHR) and depression symptoms among the United States adults: a cross-sectional study

    Background

    Depression acts as a noteworthy worldwide public health challenge. Identifying accessible biomarkers is crucial for early diagnosis and...

    Guangwei Qing, Cheng Bao, ... Bo Wei in Lipids in Health and Disease
    Article Open access 13 July 2024
  8. Recent advances in the pathogenesis and prevention strategies of dental calculus

    Dental calculus severely affects the oral health of humans and animal pets. Calculus deposition affects the gingival appearance and causes...

    Yu Wei, Gao-peng Dang, ... Li-na Niu in npj Biofilms and Microbiomes
    Article Open access 13 July 2024
  9. Enhancing Phosphate Uptake and Antifungal Activity in Tomato Plants via Bacillus licheniformis Mutagenesis: Evaluating Growth Parameters

    The objective of the investigation was to improve phosphate solubilization in tomato plants by Bacillus licheniformis , a rhizobacterium that promotes...

    Gaurav Kumar, Anjali Chauhan, ... Shubham Sharma in Brazilian Journal of Microbiology
    Article 13 July 2024
  10. Unveiling the translational dynamics of lychee (Litchi chinesis Sonn.) in response to cold stress

    Cold stress poses a significant threat to the quality and productivity of lychee ( Litchi chinensis Sonn . ). While previous research has extensively...

    Mingming Chen, Shuangfeng Dai, ... Dianfeng Zheng in BMC Genomics
    Article Open access 12 July 2024
  11. Exosome theranostics: Comparative analysis of P body and exosome proteins and their mutations for clinical applications

    Exosomes are lipid-bilayered vesicles, originating from early endosomes that capture cellular proteins and genetic materials to form multi-vesicular...

    Greeshma Satheeshan, Ayan Kumar Si, ... Thejaswini Venkatesh in Functional & Integrative Genomics
    Article 12 July 2024
  12. Fine-scale characterization of the soybean rhizosphere microbiome via synthetic long reads and avidity sequencing

    Background

    The rhizosphere microbiome displays structural and functional dynamism driven by plant, microbial, and environmental factors. While such...

    Brett Hale, Caitlin Watts, ... Asela J. Wijeratne in Environmental Microbiome
    Article Open access 12 July 2024
  13. CRISPR-Cas9-mediated deletion enhancer of MECOM play a tumor suppressor role in ovarian cancer

    MDS1 and EVI1 complex locus (MECOM), a transcription factor encoding several variants, has been implicated in progression of ovarian cancer. The...

    Yujie Chen, Qiuwen Jiang, ... Minhui Hua in Functional & Integrative Genomics
    Article 12 July 2024
  14. Develo** a genomic-based strategy to confirm microbial identity in bio-inputs containing multiple strains: an easy, fast, and low-cost multiplex PCR applied to inoculants carrying soybean Bradyrhizobium

    Brazil stands out in research, industrial development, and farmers' use of microbial inoculants, with an emphasis on getting benefits from the...

    Amanda Alves de Paiva Rolla-Santos, Leonardo Araujo Terra, ... Mariangela Hungria in Brazilian Journal of Microbiology
    Article Open access 12 July 2024
  15. Fertilization regime changes rhizosphere microbial community assembly and interaction in Phoebe bournei plantations

    Abstract

    Fertilizer input is one of the effective forest management practices, which improves soil nutrients and microbial community compositions and...

    Haoyu Yan, Yang Wu, ... Li Ji in Applied Microbiology and Biotechnology
    Article Open access 12 July 2024
  16. TGF-β1-Induced LINC01094 promotes epithelial-mesenchymal transition in hepatocellular carcinoma through the miR-122-5p/TGFBR2–SAMD2–SMAD3 Axis

    Hepatocellular carcinoma (HCC) is a common malignancy with a poor prognosis. It has been proven that long non-coding RNAs (lncRNAs) play an essential...

    **aofeng Yang, Cuicui Xu, ... Lianghai Wang in Functional & Integrative Genomics
    Article 12 July 2024
  17. Comprehensive analysis of the Xya riparia genome uncovers the dominance of DNA transposons, LTR/Gypsy elements, and their evolutionary dynamics

    Transposable elements (TEs) are DNA sequences that can move or replicate within a genome, and their study has become increasingly important in...

    Hashim Khan, Huang Yuan, ... Muhammad Majid in BMC Genomics
    Article Open access 12 July 2024
  18. Genome-wide identification of cold shock proteins (CSPs) in sweet cherry (Prunus avium L.) and exploring the differential responses of PavCSP1 and PavCSP3 to low temperature and salt stress

    Background

    Cold shock proteins (CSPs) are ubiquitous nucleic acid-binding proteins involved in growth, development, and stress response across various...

    Pan Guo, Ao Liu, ... Chang** Tian in Genes & Genomics
    Article 12 July 2024
  19. Conversion of polyploid and alloploid Saccharomyces sensu stricto strains to leu2 mutants by genome DNA editing

    Abstract

    A large number of recombinant plasmids for the yeast Saccharomyces cerevisiae have been constructed and accumulated over the past four...

    Kazuya Kiyokawa, Tetsushi Sakuma, ... Katsunori Suzuki in Applied Microbiology and Biotechnology
    Article Open access 12 July 2024
  20. A novel homozygous missense TTC12 variant identified in an infertile Pakistani man with severe oligoasthenoteratozoospermia and primary ciliary dyskinesia

    TTC12 is a cytoplasmic and centromere-localized protein that plays a role in the proper assembly of dynein arm complexes in motile cilia in both...

    Imtiaz Ali, Haider Ali, ... Qinghua Shi in Molecular Genetics and Genomics
    Article 12 July 2024
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