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  1. Article

    Open Access

    Improving model fairness in image-based computer-aided diagnosis

    Deep learning has become a popular tool for computer-aided diagnosis using medical images, sometimes matching or exceeding the performance of clinicians. However, these models can also reflect and amplify huma...

    Mingquan Lin, Tianhao Li, Yifan Yang, Gregory Holste, Ying Ding in Nature Communications (2023)

  2. Article

    Open Access

    NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature

    Automatically identifying chemical and drug names in scientific publications advances information access for this important class of entities in a variety of biomedical disciplines by enabling improved retriev...

    Rezarta Islamaj, Robert Leaman, Sun Kim, Dongseop Kwon, Chih-Hsuan Wei in Scientific Data (2021)

  3. Article

    Open Access

    BioWordVec, improving biomedical word embeddings with subword information and MeSH

    Distributed word representations have become an essential foundation for biomedical natural language processing (BioNLP), text mining and information retrieval. Word embeddings are traditionally computed at th...

    Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, Zhiyong Lu in Scientific Data (2019)

  4. Article

    Open Access

    PubMed Phrases, an open set of coherent phrases for searching biomedical literature

    In biomedicine, key concepts are often expressed by multiple words (e.g., ‘zinc finger protein’). Previous work has shown treating a sequence of words as a meaningful unit, where applicable, is not only import...

    Sun Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu in Scientific Data (2018)

  5. Article

    Open Access

    Optimal pathological response indicated better long-term outcome among patients with stage IB2 to IIB cervical cancer submitted to neoadjuvant chemotherapy

    The role of pathological response in long-term outcome is still unclear in cervical cancer patients treated with neoadjuvant chemotherapy (NACT) in China. This study aimed to investigate the effect of optimal ...

    Kecheng Huang, Haiying Sun, Zhilan Chen, **ong Li, ShaoShuai Wang in Scientific Reports (2016)

  6. Article

    Open Access

    A novel recombinant lineage’s contribution to the outbreak of coxsackievirus A6-associated hand, foot and mouth disease in Shanghai, China, 2012-2013

    Since late 2012, coxsackievirus A6 (CVA6) has gradually become the predominant pathogen responsible for hand-foot-mouth disease (HFMD) in several provinces of China. A total of 626 patients diagnosed with HFMD...

    **aobo Feng, Wencai Guan, Yifeng Guo, Huiju Yu, **aoling Zhang in Scientific Reports (2015)