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  1. Article

    Open Access

    The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants

    RNA-DNA hybrid (R-loop)-associated long noncoding RNAs (lncRNAs), including the Arabidopsis lncRNA AUXIN-REGULATED PROMOTER LOOP (APOLO), are emerging as important regulators of three-dimensional chromatin confor...

    Camille Fonouni-Farde, Aurélie Christ, Thomas Blein in Genome Biology (2022)

  2. Article

    Open Access

    Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana

    How species can adapt to abrupt environmental changes, particularly in the absence of standing genetic variation, is poorly understood and a pressing question in the face of ongoing climate change. Here we lev...

    Pierre Baduel, Basile Leduque, Amandine Ignace, Isabelle Gy, José Gil Jr in Genome Biology (2021)

  3. Article

    Open Access

    TE-Tracker: systematic identification of transposition events through whole-genome resequencing

    Transposable elements (TEs) are DNA sequences that are able to move from their location in the genome by cutting or copying themselves to another locus. As such, they are increasingly recognized as impacting a...

    Arthur Gilly, Mathilde Etcheverry, Mohammed-Amin Madoui, Julie Guy in BMC Bioinformatics (2014)