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  1. Article

    Open Access

    Estimating bee distributions and their functional range to map important areas for protecting bee species and their functions

    The decline of wild bee populations causes the decline of bee-pollinated plant populations through the deterioration of pollination services. Since high bee species richness generally involves high functional ...

    Yukari Suzuki-Ohno, Fumiko Ishihama, Jun Yokoyama, Maki N. Inoue in Scientific Reports (2024)

  2. Article

    Open Access

    Deep learning increases the availability of organism photographs taken by citizens in citizen science programs

    Citizen science programs using organism photographs have become popular, but there are two problems related to photographs. One problem is the low quality of photographs. It is laborious to identify species in...

    Yukari Suzuki-Ohno, Thomas Westfechtel, Jun Yokoyama, Kazunori Ohno in Scientific Reports (2022)

  3. Article

    Open Access

    Correction to: Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume–rhizobia symbiosis

    A correction to this paper has been published: https://doi.org/10.1007/s10265-021-01295-3

    Yuji Tokumoto, Kayo Hashimoto, Takashi Soyano, Seishiro Aoki in Journal of Plant Research (2021)

  4. Article

    Open Access

    Estimating possible bumblebee range shifts in response to climate and land cover changes

    Wild bee decline has been reported worldwide. Some bumblebee species (Bombus spp.) have declined in Europe and North America, and their ranges have shrunk due to climate and land cover changes. In countries with ...

    Yukari Suzuki-Ohno, Jun Yokoyama, Tohru Nakashizuka, Masakado Kawata in Scientific Reports (2020)

  5. Article

    Open Access

    Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume–rhizobia symbiosis

    Root nodule (RN) symbiosis is a mutualistic interaction observed between nitrogen-fixing soil bacteria and nodulating plants, which are scattered in only four orders of angiosperms called nitrogen-fixing clade...

    Yuji Tokumoto, Kayo Hashimoto, Takashi Soyano, Seishiro Aoki in Journal of Plant Research (2020)

  6. Article

    Open Access

    Utilization of photographs taken by citizens for estimating bumblebee distributions

    Citizen science is a powerful tool for collecting large volumes of observational data on various species. These data are used to estimate distributions using environmental factors with Species Distribution Mod...

    Yukari Suzuki-Ohno, Jun Yokoyama, Tohru Nakashizuka, Masakado Kawata in Scientific Reports (2017)

  7. No Access

    Article

    The tiny-leaved orchid Cephalanthera subaphylla obtains most of its carbon via mycoheterotrophy

    The evolution of mycoheterotrophy has been accompanied by extreme reductions in plant leaf size and photosynthetic capacity. Partially mycoheterotrophic plants, which obtain carbon from both photosynthesis and...

    Yuki Sakamoto, Yuki Ogura-Tsujita, Kinuko Ito, Kenji Suetsugu in Journal of Plant Research (2016)

  8. Article

    Open Access

    Morvan’s syndrome and myasthenia gravis related to familial Mediterranean fever gene mutations

    We present the first case of Morvan’s syndrome (MoS) and myasthenia gravis (MG) related to familial Mediterranean fever (FMF) gene mutations.

    Junpei Koge, Shintaro Hayashi, Hiroyuki Murai, Jun Yokoyama in Journal of Neuroinflammation (2016)

  9. Article

    Open Access

    Stable isotope labeling strategy based on coding theory

    We describe a strategy for stable isotope-aided protein nuclear magnetic resonance (NMR) analysis, called stable isotope encoding. The basic idea of this strategy is that amino-acid selective labeling can be ...

    Takuma Kasai, Seizo Koshiba, Jun Yokoyama, Takanori Kigawa in Journal of Biomolecular NMR (2015)

  10. No Access

    Article

    Stable isotope labeling of glycoprotein expressed in silkworms using immunoglobulin G as a test molecule

    Silkworms serve as promising bioreactors for the production of recombinant proteins, including glycoproteins and membrane proteins, for structural and functional protein analyses. However, lack of methodology...

    Hirokazu Yagi, Masatoshi Nakamura, Jun Yokoyama, Ying Zhang in Journal of Biomolecular NMR (2015)

  11. No Access

    Article

    Production and characterization of interspecific hybrids between Asparagus kiusianus Makino and A. officinalis L.

    Interspecific hybridization is a useful technique to introduce characteristics from wild species into crops. Garden asparagus (Asparagus officinalis, 2n = 2x = 20) is an economically important vegetable that is n...

    Takuro Ito, Itaru Konno, Shosei Kubota, Toshinori Ochiai, Takahiro Sonoda in Euphytica (2011)

  12. Article

    Open Access

    The long-term consequences of hybridization between the two Daphnia species, D. galeata and D. dentifera, in mature habitats

    Ecological specializations such as antipredator defense can reinforce morphological and distributional divergence within hybridizing species. Two hybridizing species of Daphnia (D. galeata and D. dentifera) are d...

    Seiji Ishida, Akiko Takahashi, Noe Matsushima, Jun Yokoyama in BMC Evolutionary Biology (2011)

  13. No Access

    Article

    Expression analysis of an APETALA1/FRUITFULL-like gene in Phalaenopsis sp. ‘Hatsuyuki’ (Orchidaceae)

    Members of the APETALA1 (AP1)/FRUITFULL (FUL)-like gene family of MADS-box genes play important roles in controlling the development of floral organs. To understand the molecular mechanisms of floral development ...

    In-Ja Song, Tatsuya Fukuda, Suk-Min Ko in Horticulture, Environment, and Biotechnolo… (2011)

  14. No Access

    Article

    Phenotypic and genetic differences in a perennial herb across a natural gradient of CO2 concentration

    The atmospheric CO2 concentration [CO2] has been increasing markedly since the industrial revolution and is predicted to reach 500–1,000 μmol mol−1 by the end of this century. Although the short-term and acclimat...

    Ito Nakamura, Yusuke Onoda, Noe Matsushima, Jun Yokoyama, Masakado Kawata in Oecologia (2011)

  15. Article

    Open Access

    The MC1R gene in the guppy (Poecilia reticulata): Genotypic and phenotypic polymorphisms

    The guppy (Poecilia reticulata) is an important model organism for studying sexual selection; male guppies have complex and conspicuous pigmentation, and female guppies exhibit preferences for males with specific...

    Ayumi Tezuka, Hiroaki Yamamoto, Jun Yokoyama, Cock van Oosterhout in BMC Research Notes (2011)

  16. No Access

    Article

    An economical method for producing stable-isotope labeled proteins by the E. coli cell-free system

    Improvement of the cell-free protein synthesis system (CF) over the past decade have made it one of the most powerful protein production methods. The CF approach is especially useful for stable-isotope (SI) la...

    Jun Yokoyama, Takayoshi Matsuda, Seizo Koshiba in Journal of Biomolecular NMR (2010)

  17. No Access

    Article

    Environmental factors and land uses related to the naturalization of Bombus terrestris in Hokkaido, northern Japan

    The buff-tailed bumblebee, Bombus terrestris, was introduced into Japan in 1991 and is now widely established in Hokkaido, northern Japan. To characterize environmental factors affecting the naturalization of B. ...

    Yurika Nukatsuka, Jun Yokoyama in Biological Invasions (2010)

  18. Article

    Open Access

    Size-dependent foraging gene expression and behavioral caste differentiation in Bombus ignitus

    In eusocial hymenopteran insects, foraging genes, members of the cGMP-dependent protein kinase family, are considered to contribute to division of labor through behavioral caste differentiation. However, the rela...

    Yosuke Kodaira, Hajime Ohtsuki, Jun Yokoyama, Masakado Kawata in BMC Research Notes (2009)

  19. No Access

    Article

    Genetic structure of island populations of the endangered bat Hipposideros turpis turpis: implications for conservation

    Efforts for the conservation of the endangered bat species Hipposideros turpis turpis in southern Japan are hampered by a lack of information about its biology and natural history and by the increasing effect of ...

    Lázaro Miguel Echenique-Díaz, Jun Yokoyama, Osamu Takahashi in Population Ecology (2009)

  20. Article

    Phylogenetic position of Oxygyne shinzatoi (Burmanniaceae) inferred from 18S rDNA sequences

    Jun Yokoyama, Yayoi Koizumi, Masatsugu Yokota in Journal of Plant Research (2008)

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