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  1. Article

    Open Access

    Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

    Gene fusions are important cancer drivers in pediatric cancer and their accurate detection is essential for diagnosis and treatment. Clinical decision-making requires high confidence and precision of detection...

    Ianthe A. E. M. van Belzen, Casey Cai, Marc van Tuil, Shashi Badloe in BMC Cancer (2023)

  2. Article

    Open Access

    Structural variant detection in cancer genomes: computational challenges and perspectives for precision oncology

    Cancer is generally characterized by acquired genomic aberrations in a broad spectrum of types and sizes, ranging from single nucleotide variants to structural variants (SVs). At least 30% of cancers have a kn...

    Ianthe A. E. M. van Belzen, Alexander Schönhuth, Patrick Kemmeren in npj Precision Oncology (2021)

  3. Article

    Open Access

    Exome sequencing in routine diagnostics: a generic test for 254 patients with primary immunodeficiencies

    Diagnosis of primary immunodeficiencies (PIDs) is complex and cumbersome yet important for the clinical management of the disease. Exome sequencing may provide a genetic diagnosis in a significant number of pa...

    Peer Arts, Annet Simons, Mofareh S. AlZahrani, Elanur Yilmaz in Genome Medicine (2019)

  4. No Access

    Article

    A germline homozygous mutation in the base-excision repair gene NTHL1 causes adenomatous polyposis and colorectal cancer

    Roland Kuiper and colleagues identify a homozygous germline nonsense mutation in the base-excision repair gene NTHL1 in three families with recessive inheritance of adenomatous polyposis.

    Robbert D A Weren, Marjolijn J L Ligtenberg, C Marleen Kets in Nature Genetics (2015)

  5. No Access

    Article

    Refining analyses of copy number variation identifies specific genes associated with developmental delay

    Evan Eichler and colleagues report an expanded copy number variation (CNV) morbidity map of developmental delay, with additional resequencing of candidate genes in regions implicated by large CNVs. They identi...

    Bradley P Coe, Kali Witherspoon, Jill A Rosenfeld, Bregje W M van Bon in Nature Genetics (2014)