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  1. Article

    Open Access

    Low-input PacBio sequencing generates high-quality individual fly genomes and characterizes mutational processes

    Long-read sequencing, exemplified by PacBio, revolutionizes genomics, overcoming challenges like repetitive sequences. However, the high DNA requirement ( > 1 µg) is prohibitive for small organisms. We develop...

    Hangxing Jia, Shengjun Tan, Yingao Cai, Yanyan Guo, Jieyu Shen in Nature Communications (2024)

  2. Article

    Open Access

    A widely conserved protein Rof inhibits transcription termination factor Rho and promotes Salmonella virulence program

    Transcription is crucial for the expression of genetic information and its efficient and accurate termination is required for all living organisms. Rho-dependent termination could rapidly terminate unwanted pr...

    **g Zhang, Shuo Zhang, Wei Zhou, **ang Zhang, Guan** Li in Nature Communications (2024)

  3. Article

    Open Access

    Direct visualization of stacking-selective self-intercalation in epitaxial Nb1+xSe2 films

    Two-dimensional (2D) van der Waals (vdW) materials offer rich tuning opportunities generated by different stacking configurations or by introducing intercalants into the vdW gaps. Current knowledge of the inte...

    Hongguang Wang, Jiawei Zhang, Chen Shen, Chao Yang, Kathrin Küster in Nature Communications (2024)

  4. Article

    Open Access

    Genetic drivers of heterogeneity in type 2 diabetes pathophysiology

    Type 2 diabetes (T2D) is a heterogeneous disease that develops through diverse pathophysiological processes1,2 and molecular mechanisms that are often specific to cell type3,4. Here, to characterize the genetic c...

    Ken Suzuki, Konstantinos Hatzikotoulas, Lorraine Southam, Henry J. Taylor in Nature (2024)

  5. Article

    Open Access

    Design of target specific peptide inhibitors using generative deep learning and molecular dynamics simulations

    We introduce a computational approach for the design of target-specific peptides. Our method integrates a Gated Recurrent Unit-based Variational Autoencoder with Rosetta FlexPepDock for peptide sequence genera...

    Sijie Chen, Tong Lin, Ruchira Basu, Jeremy Ritchey, Shen Wang in Nature Communications (2024)

  6. Article

    Open Access

    Shape-recovery of implanted shape-memory devices remotely triggered via image-guided ultrasound heating

    Shape-memory materials hold great potential to impart medical devices with functionalities useful during implantation, locomotion, drug delivery, and removal. However, their clinical translation is limited by ...

    Yang Zhu, Kaicheng Deng, Jianwei Zhou, Chong Lai, Zuwei Ma in Nature Communications (2024)

  7. No Access

    Article

    Observation and quantification of the pseudogap in unitary Fermi gases

    The microscopic origin of high-temperature superconductivity in cuprates remains unknown. It is widely believed that substantial progress could be achieved by better understanding of the pseudogap phase, a nor...

    ** Li, Shuai Wang, **ang Luo, Yu-Yang Zhou, Ke **e, Hong-Chi Shen, Yu-Zhao Nie in Nature (2024)

  8. Article

    Open Access

    Electrically and mechanically driven rotation of polar spirals in a relaxor ferroelectric polymer

    Topology created by quasi-continuous spatial variations of a local polarization direction represents an exotic state of matter, but field-driven manipulation has been hitherto limited to creation and destructi...

    Mengfan Guo, Erxiang Xu, Houbing Huang, Changqing Guo, Hetian Chen in Nature Communications (2024)

  9. Article

    Open Access

    Mutant p53 gains oncogenic functions through a chromosomal instability-induced cytosolic DNA response

    Inactivating TP53 mutations leads to a loss of function of p53, but can also often result in oncogenic gain-of-function (GOF) of mutant p53 (mutp53) proteins which promotes tumor development and progression. The ...

    Mei Zhao, Tianxiao Wang, Frederico O. Gleber-Netto, Zhen Chen in Nature Communications (2024)

  10. Article

    Open Access

    Regulatory variants of APOBEC3 genes potentially associate with COVID-19 severity in populations with African ancestry

    Since November 2019, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has caused the worldwide pandemic of the coronavirus disease 2019 (COVID-19), the impact of which is huge to the lives of ...

    Ke Zhang, Fang Chen, Hu-Yan Shen, **-** Zhang, Han Gao, Hong Peng in Scientific Reports (2023)

  11. Article

    Open Access

    Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site

    The HIV-1 fusion peptide (FP) represents a promising vaccine target, but global FP sequence diversity among circulating strains has limited anti-FP antibodies to ~60% neutralization breadth. Here we evolve the...

    Bailey B. Banach, Sergei Pletnev, Adam S. Olia, Kai Xu in Nature Communications (2023)

  12. Article

    Open Access

    Reentrance of interface superconductivity in a high-Tc cuprate heterostructure

    Increasing the carrier density in a Mott insulator by chemical do** gives rise to a generic superconducting dome in high temperature superconductors. An intriguing question is whether a second superconductin...

    J. Y. Shen, C. Y. Shi, Z. M. Pan, L. L. Ju, M. D. Dong, G. F. Chen in Nature Communications (2023)

  13. Article

    Open Access

    Insights into the missing apiosylation step in flavonoid apiosides biosynthesis of Leguminosae plants

    Apiose is a natural pentose containing an unusual branched-chain structure. Apiosides are bioactive natural products widely present in the plant kingdom. However, little is known on the key apiosylation reacti...

    Hao-Tian Wang, Zi-Long Wang, Kuan Chen, Ming-Ju Yao, Meng Zhang in Nature Communications (2023)

  14. Article

    Open Access

    Reactive wetting enabled anchoring of non-wettable iron oxide in liquid metal for miniature soft robot

    Magnetic liquid metal (LM) soft robots attract considerable attentions because of distinctive immiscibility, deformability and maneuverability. However, conventional LM composites relying on alloying between L...

    Yifeng Shen, Dongdong **, Mingming Fu, Sanhu Liu, Zhiwu Xu in Nature Communications (2023)

  15. Article

    Open Access

    CD44 connects autophagy decline and ageing in the vascular endothelium

    The decline of endothelial autophagy is closely related to vascular senescence and disease, although the molecular mechanisms connecting these outcomes in vascular endothelial cells (VECs) remain unclear. Here...

    Lu Zhang, Peichang Yang, **gxuan Chen, Zhiqiang Chen, Zhihui Liu in Nature Communications (2023)

  16. Article

    Open Access

    Turing structuring with multiple nanotwins to engineer efficient and stable catalysts for hydrogen evolution reaction

    Low-dimensional nanocrystals with controllable defects or strain modifications are newly emerging active electrocatalysts for hydrogen-energy conversion and utilization; however, a crucial challenge remains in...

    Jialun Gu, Lanxi Li, Youneng **e, Bo Chen, Fubo Tian, Yanju Wang in Nature Communications (2023)

  17. Article

    Open Access

    Phosphoantigens glue butyrophilin 3A1 and 2A1 to activate Vγ9Vδ2 T cells

    In both cancer and infections, diseased cells are presented to human Vγ9Vδ2 T cells through an ‘inside out’ signalling process whereby structurally diverse phosphoantigen (pAg) molecules are sensed by the intr...

    Linjie Yuan, **anqiang Ma, Yunyun Yang, Yingying Qu, **n Li, **aoyu Zhu in Nature (2023)

  18. No Access

    Article

    Precessing jet nozzle connecting to a spinning black hole in M87

    The nearby radio galaxy M87 offers a unique opportunity to explore the connections between the central supermassive black hole and relativistic jets. Previous studies of the inner region of M87 revealed a wide...

    Yuzhu Cui, Kazuhiro Hada, Tomohisa Kawashima, Motoki Kino, Weikang Lin in Nature (2023)

  19. Article

    Open Access

    Unreprogrammed H3K9me3 prevents minor zygotic genome activation and lineage commitment in SCNT embryos

    Somatic cell nuclear transfer (SCNT) can be used to reprogram differentiated somatic cells to a totipotent state but has poor efficiency in supporting full-term development. H3K9me3 is considered to be an epig...

    Ruimin Xu, Qianshu Zhu, Yuyan Zhao, Mo Chen, Lingyue Yang in Nature Communications (2023)

  20. Article

    Open Access

    Large depth-of-field ultra-compact microscope by progressive optimization and deep learning

    The optical microscope is customarily an instrument of substantial size and expense but limited performance. Here we report an integrated microscope that achieves optical performance beyond a commercial micros...

    Yuanlong Zhang, **aofei Song, Jiachen **e, **g Hu, Jiawei Chen in Nature Communications (2023)

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