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  1. No Access

    Article

    Phylogenomics, divergence times and notes of orders in Basidiomycota

    Basidiomycota is one of the major phyla in the fungal tree of life. The outline of Basidiomycota provides essential taxonomic information for researchers and workers in mycology. In this study, we present a ti...

    Mao-Qiang He, Bin Cao, Fei Liu, Teun Boekhout, Teodor T. Denchev in Fungal Diversity (2024)

  2. No Access

    Article

    Integrated physiological, metabolome, and transcriptome analysis of the hepatopancreas in Penaeus vannamei under ammonia stress

    Ammonia nitrogen is a common environmental factor in aquaculture systems. High levels of ammonia nitrogen threaten the health of shrimp. This study aimed to investigate ammonia nitrogen stress in the hepatopan...

    **yan Li, Lanting Lin, Hongbiao Zhuo, Yuan Zhang in Aquaculture International (2024)

  3. Article

    Open Access

    LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA

    Methylation-based liquid biopsies show promises in detecting cancer using circulating cell-free DNA; however, current limitations impede clinical application. Most assays necessitate substantial DNA inputs, po...

    **ao-Long Cui, Ji Nie, Houxiang Zhu, Krissana Kowitwanich in Genome Biology (2024)

  4. Article

    Open Access

    Revealing critical mechanisms in determining sorghum resistance to drought and salt using mRNA, small RNA and degradome sequencing

    Plant growth and development are severely threatened by drought and salt stresses. Compared with structural genes, transcription factors (TFs) play more pivotal roles in plant growth and stress adaptation. How...

    Qiong Li, Jibin Wang, Qian Liu, Junhan Zhang, **nlei Zhu, Yinpeng Hua in BMC Plant Biology (2024)

  5. No Access

    Article

    Proteomics Sequencing Reveals the Role of TGF-β Signaling Pathway in the Peripheral Blood of Offspring Rats Exposed to Fluoride

    The underlying mechanism of fluorosis has not been fully elucidated. The purpose of this study was to explore the mechanism of fluorosis induced by sodium fluoride (NaF) using proteomics. Six offspring rats ex...

    Fang-fang Yu, Shui-yuan Yu, Lei-zhen Duan, Shuo Yang in Biological Trace Element Research (2024)

  6. Article

    Open Access

    DDRGK1-mediated ER-phagy attenuates acute kidney injury through ER-stress and apoptosis

    Acute kidney injury (AKI) constitutes a prevalent clinical syndrome characterized by elevated morbidity and mortality rates, emerging as a significant public health issue. This study investigates the interplay...

    Haijiao **, Yuanting Yang, Xuying Zhu, Yin Zhou, Yao Xu, Jialin Li in Cell Death & Disease (2024)

  7. No Access

    Article

    Genome-Wide Identification, Structural Analysis, and Expression Patterns of Tomato SRS Gene Family

    Short internodes-related sequence (SRS) family genes are important regulators in multiple growth and development programs. However, the SRS gene family in tomato (Solanum lycopersicum), an important model plant f...

    Fenfen Li, Baolu Cui, Zhiguo Zhu, Shengen Zhou in Journal of Plant Growth Regulation (2024)

  8. No Access

    Article

    Tetanus toxin and botulinum neurotoxin–derived fusion molecules are effective bivalent vaccines

    Tetanus toxin (TeNT) and botulinum neurotoxins (BoNTs) are neuroprotein toxins, with the latter being the most toxic known protein. They are structurally similar and contain three functional domains: an N-term...

    Bo-Lin Li, **g-Rong Wang, Xu-Yang Liu in Applied Microbiology and Biotechnology (2023)

  9. No Access

    Article

    YTHDC1 as a tumor progression suppressor through modulating FSP1-dependent ferroptosis suppression in lung cancer

    Ferroptosis is a regulated cell death process initiated by iron-dependent phospholipid peroxidation and is mainly suppressed by GPX4-dependent and FSP1-dependent surveillance mechanisms. However, how the ferro...

    Shuai Yuan, Shu **, Hong Weng, Meng-Meng Guo, **-Hui Zhang in Cell Death & Differentiation (2023)

  10. Article

    Open Access

    Comprehensive analysis of the UDP-glucuronate decarboxylase (UXS) gene family in tobacco and functional characterization of NtUXS16 in Golgi apparatus in Arabidopsis

    UDP-glucuronate decarboxylase (also named UXS) converts UDP-glucuronic acid (UDP-GlcA) to UDP-xylose (UDP-Xyl) by decarboxylation of the C6-carboxylic acid of glucuronic acid. UDP-Xyl is an important sugar don...

    Zhimin Li, Run** Chen, Yufang Wen, Hanxiang Liu, Yangyang Chen in BMC Plant Biology (2023)

  11. No Access

    Article

    Manganese regulation of COPII condensation controls circulating lipid homeostasis

    Precise control of circulating lipids is instrumental in health and disease. Bulk lipids, carried by specialized lipoproteins, are secreted into the circulation, initially via the coat protein complex II (COPI...

    **ao Wang, Runze Huang, Yawei Wang, Wen**g Zhou, Yating Hu in Nature Cell Biology (2023)

  12. No Access

    Article

    Long-term detraining reverses the improvement of lifelong exercise on skeletal muscle ferroptosis and inflammation in aging rats: fiber-type dependence of the Keap1/Nrf2 pathway

    We investigated the effects of lifelong aerobic exercise and 8 months of detraining after 10 months of aerobic training on circulation, skeletal muscle oxidative stress, and inflammation in aging rats. Sprague...

    Zhuang-Zhi Wang, Hai-Chen Xu, Huan-**a Zhou, Chen-Kai Zhang, Bo-Ming Li in Biogerontology (2023)

  13. No Access

    Article

    Tree communities and functional traits determine herbivore compositional turnover

    There are many factors known to drive species turnover, although the mechanisms by which these operate are less clear. Based on comprehensive datasets from the largest tree diversity experiment worldwide (BEF-...

    Ming-Qiang Wang, Zhixin Wen, **zhao Ke, Douglas Chesters, Yi Li in Oecologia (2023)

  14. Article

    Open Access

    Genome and whole-genome resequencing of Cinnamomum camphora elucidate its dominance in subtropical urban landscapes

    Lauraceae is well known for its significant phylogenetic position as well as important economic and ornamental value; however, most evergreen species in Lauraceae are restricted to tropical regions. In contras...

    Danqing Li, Han-Yang Lin, **uyun Wang, Bo Bi, Yuan Gao, Lingmei Shao in BMC Biology (2023)

  15. Article

    Open Access

    XrvB regulates the type III secretion system by directly repressing hrpG transcription in Xanthomonas oryzae pv. oryzicola

    Xrv proteins are a group of regulators in Xanthomonas spp., belonging to the histone-like nucleoid-structuring (H-NS) proteins of Gram-negative bacteria. The rice bacterial leaf streak pathogen Xanthomonas oryzae

    Jian-Ling Peng, Jia-Feng Shi, Zeng-Feng Ma, **ao-Long Zhou in Phytopathology Research (2023)

  16. Article

    Open Access

    Phagotrophic protists preserve antibiotic-resistant opportunistic human pathogens in the vegetable phyllosphere

    Food safety of leafy greens is an emerging public health issue as they can harbor opportunistic human pathogens (OHPs) and expose OHPs to consumers. Protists are an integral part of phyllosphere microbial ecos...

    Chenshuo Lin, Li-Juan Li, Kexin Ren, Shu-Yi-Dan Zhou, Alain Isabwe in ISME Communications (2023)

  17. Article

    Open Access

    SRSF3/AMOTL1 splicing axis promotes the tumorigenesis of nasopharyngeal carcinoma through regulating the nucleus translocation of YAP1

    Dysregulation of serine/arginine splicing factors (SRSFs) and abnormal alternative splicing (AS) have been widely implicated in various cancers but scarcely investigated in nasopharyngeal carcinoma (NPC). Here...

    **ao-Chen Xu, Jia-**n Jiang, Ya-Qing Zhou, Shuai He, Yang Liu in Cell Death & Disease (2023)

  18. Article

    Open Access

    Exosomal PGAM1 promotes prostate cancer angiogenesis and metastasis by interacting with ACTG1

    Tumor-derived exosomes and their contents promote cancer metastasis. Phosphoglycerate mutase 1 (PGAM1) is involved in various cancer-related processes. Nevertheless, the underlying mechanism of exosomal PGAM1 ...

    Jun-qi Luo, Tao-wei Yang, Jun Wu, Hou-hua Lai, Li-bin Zou in Cell Death & Disease (2023)

  19. Article

    Open Access

    Large yellow croaker (Larimichthys crocea) mitofusin 2 inhibits type I IFN responses by degrading MAVS via enhanced K48-linked ubiquitination

    In mammals, mitofusin 2 (MFN2) is involved in mitochondrial fusion, and suppresses the virus-induced RIG-I-like receptor (RLR) signaling pathway. However, little is known about the function of MFN2 in non-mamm...

    Wen-**ng Li, **ao-Hong Wang, Yi-Jun Lin, Yuan-Yuan Zhou in Marine Life Science & Technology (2023)

  20. Article

    Specific pupylation as IDEntity reporter (SPIDER) for the identification of protein-biomolecule interactions

    Protein-biomolecule interactions play pivotal roles in almost all biological processes. For a biomolecule of interest, the identification of the interacting protein(s) is essential. For this need, although man...

    He-Wei Jiang, Hong Chen, Yun-**ao Zheng, Xue-Ning Wang in Science China Life Sciences (2023)

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