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Organism Environment Interactions
Organisms exist in a state of continuous exchange of energy with their environments. These energy forms include electromagnetic radiation (e.g.,...
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Introduction
What is mathematical biology? The field of mathematical biology may be defined as the application of mathematical approaches for understanding...
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Addendum: An Acid Test for NOIA
Measurement theory is nuclear to mathematical modeling. Generally speaking, modeling can be seen as develo** mathematical functions (or maps) whose...
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Discovering the Genotype
For some decades now, gene map** has challenged the theory linking genotype and environment to phenotype—the mathematical description of the...
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Applied Cases of Advanced Genetic Modelling
In this chapter, three applications of the theoretical proposals expounded in the previous chapters of this book are presented. The first application...
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The Comes and Goes of the Black Box Perspective in Quantitative Genetics
Since its birth and for a long time, quantitative genetics assumed the infinitesimal model as a simplistic baseline on which to sustain a top-down...
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Machine Vision Applied to Entomology
Machine vision has produced many helpful image processing techniques in several fields, such as object detection, classification, and segmentation....
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DNA Methylation Data Analysis Using Msuite
DNA methylation is a widespread epigenetic modification responsible for many biological regulation pathways. The development of various powerful...
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Interactive DNA Methylation Array Analysis with ShinyÉPICo
Arrays provide a cost-effective platform for the analysis of human DNA methylation. ShinyÉPICo is an interactive, web-based, and graphical tool that...
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Methylome Imputation by Methylation Patterns
DNA methylation is studied extensively for its relations with several biological processes such as transcriptional regulation. While methylation...
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Quantitative Comparison of Multiple Chromatin Immunoprecipitation-Sequencing (ChIP-seq) Experiments with spikChIP
The chromatin immunoprecipitation coupled with the next-generation sequencing (ChIP-seq) is a powerful technique that enables to characterize the...
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Predicting Chromatin Interactions from DNA Sequence Using DeepC
The genome 3D structure is central to understanding how disease-associated genetic variants in the noncoding genome regulate their target genes....
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A Guide to MethylationToActivity: A Deep Learning Framework That Reveals Promoter Activity Landscapes from DNA Methylomes in Individual Tumors
Genome-wide DNA methylomes have contributed greatly to tumor detection and subclassification. However, interpreting the biological impact of the DNA...
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Neuroeducation and Mathematics: The Formation of New Educational Practices
Recent research in educational neuroscience has established the correlation between the way the human brain works and the process of perceiving and...
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Proposal for Investigating Self-Efficacy in Mathematics Using a Portable EEG System
The present research proposal focuses on the search for the relation-ship between self-efficacy in mathematics, performance in mathematical tests,...
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An Optimized Cloud Computing Method for Extracting Molecular Descriptors
Extracting molecular descriptors from chemical compounds is an essential preprocessing phase for develo** accurate classification models....
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Correction to: Trust and Credit in Organizations and Institutions
Chapter 2: Figures 2.3 (b), 2.5 (b), 2.6 (d,e) and 2.8 (a,b,c,d) have been replaced with new figures.
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A General Theory of Genetic Effects
The natural and orthogonal interactions (NOIA) model was originally developed not only as one more step in the improvement of genetic models but...
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Genetic Effects in Populations Under Linkage Equilibrium
In this chapter, models of genetic effects at the population level are provided that cover all the genetic architectures considered in the previous...