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  1. Redundancy in microbiota-mediated suppression of the soybean cyst nematode

    Background

    Soybean cyst nematodes (SCN) as animal parasites of plants are not usually interested in killing the host but are rather focused on...

    Muzammil Hussain, Peixue Xuan, ... Meichun **ang in Microbiome
    Article Open access 15 July 2024
  2. Map** of Aegilops speltoides derived leaf rust and stripe rust resistance genes using 35K SNP array

    Wheat is an essential food commodity cultivated throughout the world. However, this crop faces continuous threats from fungal pathogens, leaf rust...

    Balihar Kaur, Bukke Kutti Bai, ... Satinder Kaur in BMC Genomic Data
    Article Open access 15 July 2024
  3. Systemic interindividual DNA methylation variants in cattle share major hallmarks with those in humans

    Background

    We recently identified ~ 10,000 correlated regions of systemic interindividual epigenetic variation (CoRSIVs) in the human genome. These...

    Wen-Jou Chang, Maria S. Baker, ... Robert A. Waterland in Genome Biology
    Article Open access 15 July 2024
  4. Genomic characterization and virulence gene profiling of Erysipelothrix rhusiopathiae isolated from widespread muskox mortalities in the Canadian Arctic Archipelago

    Background

    Muskoxen are important ecosystem components and provide food, economic opportunities, and cultural well-being for Indigenous communities in...

    Lakshmi Vineesha Seru, Taya L. Forde, ... Susan J. Kutz in BMC Genomics
    Article Open access 14 July 2024
  5. Increasing the efficiency of CRISPR/Cas9-mediated genome editing in the citrus postharvest pathogen Penicillium digitatum

    Background

    Penicillium digitatum is a fungal plant pathogen that causes the green mold disease in harvested citrus fruits. Due to its economical...

    Carolina Ropero-Pérez, Jose F. Marcos, ... Sandra Garrigues in Fungal Biology and Biotechnology
    Article Open access 13 July 2024
  6. Evaluation of heritability partitioning approaches in livestock populations

    Background

    Heritability partitioning approaches estimate the contribution of different functional classes, such as coding or regulatory variants, to...

    Can Yuan, José Luis Gualdrón Duarte, ... Tom Druet in BMC Genomics
    Article Open access 13 July 2024
  7. C4-like Sesuvium sesuvioides (Aizoaceae) exhibits CAM in cotyledons and putative C4-like + CAM metabolism in adult leaves as revealed by transcriptome analysis

    Background

    The co-occurrence of C 4 and CAM photosynthesis in a single species seems to be unusual and rare. This is likely due to the difficulty in...

    Christian Siadjeu, Gudrun Kadereit in BMC Genomics
    Article Open access 13 July 2024
  8. Biogeographical distribution and community assembly of Myxococcota in mangrove sediments

    Background

    Myxococcota, characterized by their distinct social lifestyles, are widely distributed micro-predators in global sediments. They can feed...

    Dayu Zou, Cui**g Zhang, ... Meng Li in Environmental Microbiome
    Article Open access 13 July 2024
  9. A novel deep-benthic sea cucumber species of Benthodytes (Holothuroidea, Elasipodida, Psychropotidae) and its comprehensive mitochondrial genome sequencing and evolutionary analysis

    Background

    The holothurians, commonly known as sea cucumbers, are marine organisms that possess significant dietary, nutritional, and medicinal value....

    Yingying He, Hancheng Zhao, ... **lai Miao in BMC Genomics
    Article Open access 13 July 2024
  10. Dietary silymarin improves performance by altering hepatic lipid metabolism and cecal microbiota function and its metabolites in late laying hens

    Background

    Liver lipid dysregulation is one of the major factors in the decline of production performance in late-stage laying hens. Silymarin (SIL),...

    Yanghao Guo, Yudong Xu, ... ** He in Journal of Animal Science and Biotechnology
    Article Open access 13 July 2024
  11. Recent advances in the pathogenesis and prevention strategies of dental calculus

    Dental calculus severely affects the oral health of humans and animal pets. Calculus deposition affects the gingival appearance and causes...

    Yu Wei, Gao-peng Dang, ... Li-na Niu in npj Biofilms and Microbiomes
    Article Open access 13 July 2024
  12. Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index

    Motivation

    Alignment of reads to a reference genome sequence is one of the key steps in the analysis of human whole-genome sequencing data obtained...

    Guguchkin Egor, Kasianov Artem, ... Karpulevich Evgeny in BMC Bioinformatics
    Article Open access 13 July 2024
  13. Enhancing Phosphate Uptake and Antifungal Activity in Tomato Plants via Bacillus licheniformis Mutagenesis: Evaluating Growth Parameters

    The objective of the investigation was to improve phosphate solubilization in tomato plants by Bacillus licheniformis , a rhizobacterium that promotes...

    Gaurav Kumar, Anjali Chauhan, ... Shubham Sharma in Brazilian Journal of Microbiology
    Article 13 July 2024
  14. Unveiling the translational dynamics of lychee (Litchi chinesis Sonn.) in response to cold stress

    Cold stress poses a significant threat to the quality and productivity of lychee ( Litchi chinensis Sonn . ). While previous research has extensively...

    Mingming Chen, Shuangfeng Dai, ... Dianfeng Zheng in BMC Genomics
    Article Open access 12 July 2024
  15. Exosome theranostics: Comparative analysis of P body and exosome proteins and their mutations for clinical applications

    Exosomes are lipid-bilayered vesicles, originating from early endosomes that capture cellular proteins and genetic materials to form multi-vesicular...

    Greeshma Satheeshan, Ayan Kumar Si, ... Thejaswini Venkatesh in Functional & Integrative Genomics
    Article 12 July 2024
  16. Phylogenetic analysis of virulent strains of the Newcastle disease virus isolated from deceased chickens in Tanzania's Morogoro and Iringa regions

    Background

    Newcastle disease (ND) is a viral disease affecting a wide range of bird species and has a considerable financial impact on the world's...

    Charlie F. Amoia, Jean N. Hakizimana, ... Gerald Misinzo in Discover Animals
    Article Open access 12 July 2024
  17. Fine-scale characterization of the soybean rhizosphere microbiome via synthetic long reads and avidity sequencing

    Background

    The rhizosphere microbiome displays structural and functional dynamism driven by plant, microbial, and environmental factors. While such...

    Brett Hale, Caitlin Watts, ... Asela J. Wijeratne in Environmental Microbiome
    Article Open access 12 July 2024
  18. CRISPR-Cas9-mediated deletion enhancer of MECOM play a tumor suppressor role in ovarian cancer

    MDS1 and EVI1 complex locus (MECOM), a transcription factor encoding several variants, has been implicated in progression of ovarian cancer. The...

    Yujie Chen, Qiuwen Jiang, ... Minhui Hua in Functional & Integrative Genomics
    Article 12 July 2024
  19. Develo** a genomic-based strategy to confirm microbial identity in bio-inputs containing multiple strains: an easy, fast, and low-cost multiplex PCR applied to inoculants carrying soybean Bradyrhizobium

    Brazil stands out in research, industrial development, and farmers' use of microbial inoculants, with an emphasis on getting benefits from the...

    Amanda Alves de Paiva Rolla-Santos, Leonardo Araujo Terra, ... Mariangela Hungria in Brazilian Journal of Microbiology
    Article Open access 12 July 2024
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