111 Result(s)

Article

Correction to: Carriage of distinct bla_KPC-2 and bla_OXA-48 plasmids in a single ST11 hypervirulent Klebsiella pneumoniae isolate in Egypt

Yanxian Yang, Yongqiang Yang, Mohamed Abd El-Gawad El-Sayed Ahmed… in BMC Genomics (2022)

Article

Creation of Elite Rice with High-Yield, Superior-Quality and High Resistance to Brown Planthopper Based on Molecular Design

Breeding rice (Oryza sativa L.) with high yield, superior quality, desired grain shape and high resistance is the goal of breeding to meet the needs of current consumers. It is usually hard to combine multiple co...

Manman Liu, Fengfeng Fan, Shihao He, Yu Guo, Gaili Chen, Nannan Li, Nengwu Li… in Rice (2022)

Article

Comparative genomic analyses of Polymyxin-resistant Enterobacteriaceae strains from China

Mobile colistin resistance like gene (mcr-like gene) is a new type of polymyxin resistance gene that can be horizontally transferred in the Enterobacteriaceae. This has brought great challenges to the treatment o...

Zhien He, Yongqiang Yang, Wei Li, **aoling Ma, Changfeng Zhang… in BMC Genomics (2022)

Article

Knockout of circRNAs by base editing back-splice sites of circularized exons

Many circular RNAs (circRNAs) are produced from back-splicing of exons of precursor mRNAs and are generally co-expressed with cognate linear RNAs. Methods for circRNA-specific knockout are lacking, largely due...

**ang Gao, Xu-Kai Ma, **ang Li, Guo-Wei Li, Chu-**ao Liu, Jun Zhang… in Genome Biology (2022)

Article

Carriage of distinct bla_KPC-2 and bla_OXA-48 plasmids in a single ST11 hypervirulent Klebsiella pneumoniae isolate in Egypt

Carbapenem-resistant hypervirulent K. pneumoniae (CR-hvKP) causes serious infections with significant morbidity and mortality. However, the epidemiology and transmission mechanisms of CR-hvKP and the correspondin...

Yanxian Yang, Yongqiang Yang, Mohamed Abd El-Gawad El-Sayed Ahmed… in BMC Genomics (2022)

Article

Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity

Obesity and related comorbidities are major health concerns among many US immigrant populations. Emerging evidence suggests a potential involvement of the gut microbiome. Here, we evaluated gut microbiome feat...

Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen… in Genome Biology (2021)

Article

Association Map** and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage

Cold tolerance at the bud burst stage (CTB) is a key trait for direct-seeded rice. Although quantitative trait loci (QTL) affecting CTB in rice have been mapped using traditional linkage map** and genome-wid...

Dan Wang, Zhuo Liu, Yinghui **ao, **onglun Liu, Yue Chen, Zhuo Zhang, Houxiang Kang… in Rice (2021)

Article

Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules

microRNAs act as fine-tuners in the regulation of plant growth and resistance against biotic and abiotic stress. Here we demonstrate that rice miR1432 fine-tunes yield and blast disease resistance via differen...

Yan Li, Ya-** Zheng, **n-Hui Zhou, Xue-Mei Yang, **ao-Rong He, Qin Feng, Yong Zhu… in Rice (2021)

Article

Next Generation Rice Disease Research

Jonathan M. Jacobs, Guo-Liang Wang in Rice (2021)

Article

Map** the evolving landscape of super-enhancers during cell differentiation

Super-enhancers are clusters of enhancer elements that play critical roles in the maintenance of cell identity. Current investigations on super-enhancers are centered on the established ones in static cell typ...

Yan Kai, Bin E. Li, Ming Zhu, Grace Y. Li, Fei Chen, Yingli Han… in Genome Biology (2021)

Article

Effective control of large deletions after double-strand breaks by homology-directed repair and dsODN insertion

After repairing double-strand breaks (DSBs) caused by CRISPR-Cas9 cleavage, genomic damage, such as large deletions, may have pathogenic consequences.

Wei Wen, Zi-Jun Quan, Si-Ang Li, Zhi-Xue Yang, Ya-Wen Fu, Feng Zhang… in Genome Biology (2021)

Article

SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3′ tag-based RNA-seq of single cells

Single-cell RNA-seq (scRNA-seq) profiles gene expression with high resolution. Here, we develop a stepwise computational method-called SCAPTURE to identify, evaluate, and quantify cleavage and polyadenylation ...

Guo-Wei Li, Fang Nan, Guo-Hua Yuan, Chu-**ao Liu, **ndong Liu… in Genome Biology (2021)

Article

Analyzing the gonadal transcriptome of the frog Hoplobatrachus rugulosus to identify genes involved in sex development

The tiger frog (Hoplobatrachus rugulosus) is listed as a national Class II protected species in China. In the context of global warming, the sex ratio of amphibians will be affected, and the development of the po...

Yun Tang, **g-Yi Chen, Guo-Hua Ding, Zhi-Hua Lin in BMC Genomics (2021)

Article

Selection of functional EPHB2 genotypes from ENU mutated grass carp treated with GCRV

N-ethyl-N-nitrosourea (ENU) mutagenesis is a useful method for the genetic engineering of plants, and the production of functional mutants in animal models including mice and zebrafish. Grass carp reovirus (GCRV)...

Meher un Nissa, Zhu-**ang Jiang, Guo-Dong Zheng, Shu-Ming Zou in BMC Genomics (2021)

Article

Molecular basis of pathogenesis of postharvest pathogenic Fungi and control strategy in fruits: progress and prospect

The disease caused by pathogenic fungi is the main cause of postharvest loss of fresh fruits. The formulation of disease control strategies greatly depends on the understanding of pathogenic mechanism of funga...

Zhan-Quan Zhang, Tong Chen, Bo-Qiang Li, Guo-Zheng Qin… in Molecular Horticulture (2021)

Article

The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

Utilizating the plant microbiome to enhance pathogen resistance in crop production is an emerging alternative to the use of chemical pesticides. However, the diversity and structure of the microbiota, and the ...

Dagang Tian, Zaijie Chen, Yan Lin, Tingmin Liang, Ziqiang Chen, **nrui Guo… in Rice (2021)

Article

Correction to: Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes

Da-Young Lee, Jongbum Jeon, Ki-Tae Kim, Kyeongchae Cheong, Hyeunjeong Song… in BMC Genomics (2021)

Article

Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes

Plant pathogenic isolates of Rhizoctonia solani anastomosis group 1-intraspecific group IA (AG1-IA) infect a wide range of crops causing diseases such as rice sheath blight (ShB). ShB has become a serious disease...

Da-Young Lee, Jongbum Jeon, Ki-Tae Kim, Kyeongchae Cheong, Hyeunjeong Song… in BMC Genomics (2021)

Article

Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs

As core units of organ tissues, cells of various types play their harmonious rhythms to maintain the homeostasis of the human body. It is essential to identify the characteristics of cells in human organs and ...

Shuai He, Lin-He Wang, Yang Liu, Yi-Qi Li, Hai-Tian Chen, **g-Hong Xu… in Genome Biology (2020)

Article

Functional characterization and regulatory mechanism of wheat CPK34 kinase in response to drought stress

Drought is one of the most adverse environmental factors limiting crop productions and it is important to identify key genetic determinants for food safety. Calcium-dependent protein kinases (CPKs) are known t...

Ge-Zi Li, Han-**ao Li, Meng-Jun Xu, Peng-Fei Wang, **ang-Hong **ao… in BMC Genomics (2020)