Abstract
Comparative genetics is a broad field of research with the general goal of estimating similarity at some level of organization. In the 1920’s, Vavilov proposed the Law of Homologous Series (Vavilov, 1922), which states that variation for traits in related species is predictive, and thus, genetic relationships can be inferred from morphological similarity. The structure or patterns of relationships discovered can then lead to new knowledge, hypotheses, and predictions about those species. The evolution of comparative genetics research from the whole plant level to the DNA level has synergistically expanded our knowledge of genome structure and function due to the complementarity of research among scientists working on different species.
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References
Ahn S.N., and Tanksley, S.D. 1993, Comparative linkage maps of the rice and maize genomes, Proc. Natl Acad Sci. (USA) 90:7980–7984.
Ahn S., Anderson, J.A., Sorrells, M.E., Tanksley, S.D.. 1993, Homeologous relationships of rice, wheat and maize chromosomes, Mol. Gen. Genet 241:483–490.
Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., **ao, H., Merril, C.R., Wu, A., Olde, B., Moreno, R.F., Kerlavage, A.R., McCombie, W.R., and Ventner, J.C., 1991, Complementary DNA sequencing: Expressed sequence tags and human genome project, Science 252:1651–1656.
Argumuganathan K., Earle, E.D., 1991, Nuclear DNA content of some important plant species, Plant Mol. Biol.Rep 9:208–218.
Bennetzen J.L., and Freeling, M., 1993, Grasses as a single genetic system: genome composition, collinearity, and compatability, Trends in Genetics 9:259–261.
Bork, P., and Koonin, E.V., 1996, Protein sequence motifs, Curr. Opin. Struct Biol.6366.
Chen, M., San Miguel, P., de Oliveira, A.C., Woo, S.S., Ahang, H., Wing, R.A., and Bennetzen, J.L., 1997, Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes, Proc. Natl Acad Sci. (USA) 94:3431–3435.
Clark L.G., Zhang, W., and Wendel, J.F., 1995, A phylogeny of the grass family (Poaceae) based on ndhF sequence data, Syst. Bot 20:436–460.
Cooke, R., Raynal, M., Laudie, M., Grellet, F., Delseny, M., Morris, P.C., Guerrier, D., Giraudet, J., Quigley, F., Clabault, G., Li, Y.F., Mache, R., Krivitzky, M., Fy, I.J.J., Kreis, M., Lecharney, A., Parmentier, Y., Marbach, J., Fleck, J., Clement, B., Philipps, G., Herve, C., Bardet, C., Tremousaygue, D., Lescure, B., Lacomme, C., Roby, D., Jourjon, M.F., Chabrier, P., Charpenteau, J.L., Deprez, T., Amselem, J., Chiapello, H., and Hofte, H., 1996, Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs, Plant J 9:101–124.
Dubcovsky, J.M., Luo, C., and Dvorak, J., 1995, Differentiation between homoeologous chrmosomes 1A of wehat an lAm of Triticum monococcum and its recognition by the wheat Phi locus. Proc Natl Acad. Sci (USA) 92:6645–6649.
Dudley, J.W., 1993, Molecular markers in plant improvement: manipulation of genes affecting quantitative traits, Crop Sci 33:660–668.
Dunford, R.P., Kurata, N., Laurie, D.A., Money, T.A., Minobe, Y., and Moore, G., 1995, Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae, Nucleic Acids Res 23:2724–2728.
Gale, M. D., and Devos, K.M., 1998, Comparative genetics in the grasses, Proc. Natl. Acad Sci. (USA) 95:1971–1974.
Harushima, Y., Yano, M., Shomura, P., Sato, M., Shimano, T., Kuboki, Y., Yamamoto, T., Lin, S.Y., Antonio, B.A., Parco, A., Kajiya, H., Huang, N., Yamamoto, K., Nagamura, Y., Kurata, N., Khush, G.S., and Sasaki, T., 1998, A high density rice genetic linkage map with 2275 markers using a single F2 population, Genetics 148:479–494.
Hayes, P.M., Chen, F.Q., Kleinhofs, A., Kilian, A., and Mather, D., 1996, Barley genome map** and its applications, in: Methods of Genome Analysis in Plants, P.P. Jauhar ed., CRC Press, Boca Raton, USA
Hayes, P.M., Liu, B.H., Knapp, S.J., Chen, F., Jones, B., Blake, T., Franckowiak, J., Rasmusson, D., Sorrells, M., Ullrich, S.E., Wesenberg, D., and Kleinhofs, A., 1993, Quantitative trait locus effects and environmental interaction in a sample of North American barley germplasm, Theor. Appl. Genet. 87:392–401.
Henikoff, S., Greene, E.A., Pietrookovski, S., Bork, P., Attwood, T.K., and Hood, L. 1997, Gene families: The taxonomy of protein paralogs and chimeras, Science 278:609–614.
Hulbert S.H., Richter, T.E., Axtell, J.D., and Bennetzen, J.L., 1990, Genetic map** and characterization of sorghum and related crops by means of maize DNA probes, Proc. Natl. Acad. Sci. (USA) 87:4251–4255.
Jiang, J., and Gill, B.S., 1994, Different species-specific chromosome translocations in Triticum timopheevii and T. turgidum support diphyletic origin of polyploid wheats, Chromosome Res 2:59–64.
Juahar, P.P., Riera-Lizarazu, O., Dewey, W.G., Gill, B.S., Crane, CF., and Bennett, J.H., 1991, Chromosome pairing relationsips among the A, B, and D genomes of bread wheat, Theor. Appl. Genet. 82:441–449.
Kimber, G., and Alonso, A., 1981, The analysis of meiosis in hybrids. III. Tetraploid hybrids, Can. J. Genet. Cytol. 23:235–254.
Kurata N, Nagamura, Y., Yamamoto, K., Harushima, Y., Sue, N., Wu, J., Antonio, B.A., Shomura, A., Shimizu, T., Lin, S.Y., Inoue, T., Fukuda, A., Shimano, T., Kuboki, Y., Toyama, T., Miyamoto, Y., Kirihara, T., Hayasaka, K., Miyao, A., Monna, L., Zhong, H.S., Tamura, Y., Wang, Z.X., Momma, Y., Umehara, Y., Yano, M., Sasaki, T., and Minobe, Y., 1994, A 300 kilobase interval genetic map of rice including 883 expressed sequences, Nature Genetics 8:365–372.
Lazo, G.R., Larka, L.A., Hsia, C.C., McCue, K.F., Sorrells, M.E., Matthews, D.E., Au, M., Federspiel, N.A., and Anderson, O.D., 1998, Assigning Putative gene functions to mapped probe loci in the Graingenes genome database and sequencing of wheat endosperm cDNAs, Plant & Animal Genome VI.
Moore, G., Devos, K.M., Wang, Z., and Gale, M.D., 1995, Grasses, line up and form a circle, Current Biology 5:737–739.
Newman, T., de Bruijn, F.J., Green, P., Keegstra, K., Kende, H., Mclntosh, L., Ohlrogge, J., Raikhel, N., Somerville, S., Thomashow, M., Retzel, E., and Somerville, C., 1994, Genes galore: a summary of the methods for accessing the results of large scale partial sequencing of anonymous Arabidopsis thaliana cDNA clones, Plant Physiol. 106:1241–1255.
Paterson, A.H., Tanksley, S.D., and Sorrells, M.E., 1991, DNA markers in plant improvement, Adv. in Agron. 46:39–90.
Paterson A.H., Lin, Y.R., Li, S., Schertz, K.F., Doebley, J.F., Pinson, S.R.M., Liu, S.C., Stansel, J.W., and Irvine, J.E., 1995, Convergent domestication of cereal crops by independent mutations at corresponding genetic loci, Science 269:1714–1717.
Robertson, D., 1989, Understanding the relationship between qualitative and quantitative genetics, in: Development and Application of Molecular Markers to Problems in Plant Genetics. T. Helentjaris and B. Burr eds., Cold Spring Harbor Press. Cold Spring Harbor, NY. pp. 81–87.
Rothchild M.F., and Soller, M., 1997, Candidate gene analysis to detect genes controlling traits of economic importance in domestic livestock, Probe 8(2): 13–20.
Rounsley, S.D., Glodek, A., Sutton, G., Adams, M.D., Somerville, C.R., Venter, J.C., and Kerlavage, A.R., 1996, The construction of Arabidopsis expressed sequence tag assemblies, Plant Physiol. 112:1177–1183.
Snape, J.W., and Laurie, D.A., 1998, Comparative map** of agronomic trait loci in crop species, in: Crop Productivity and Sustainability — Sha** the Future, V.L. Chopra, R.R. Singh, A. Varma eds., Proc. Intl. Crop Sci. Congr., 1996. pp. 759–771.
Soreng R.J., and Davis, J.I., 1998, Phylogenetics and character evolution in the grass family (Poaceae): Simultaneous analysis of morphological and chloroplast DNA restriction site character sets, Bot. Rev. In press.
Van Deynze, A.E., Dubcovsky, J., Gill, K.S., Nelson, J.C., Sorrells, M.E., Dvorak, J., Gill, B.S., Lagudah, E.S., McCouch, S.R., and Appels, R., 1995a, Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat, Genome 38:45–59.
Van Deynze, A.E., Nelson, J.C., O’Donoughue, L.S., Ahn, S.N., Siripoonwiwat, W., Harrington, S.E., Yglesias, E.S., Braga, D.P., McCouch, S.R., and Sorrells, M.E., 1995b, Comparative map** in grasses. Oat relationships. Mol. Gen. Genet. 249:349–356.
Van Deynze, A.E., Nelson, J.C., Yglesias, E.S., Harrington, S.E., Braga, D.P., McCouch, S.R., and Sorrells, M.E., 1995c, Comparative map** in grasses. Wheat relationships, Mol. Gen Genet. 248:744–754.
Van Deynze A.E., Sorrells, M.E., Park, W.D., Ayres, N.M., Fu, H., Cartinhour, S.W., Paul, E., and McCouch, S.R., 1998, Anchor probes for comparative map** of grass genera, Theor. Appl. Genet. In press.
Vavilov, N., 1922, The Law of Homologous Series in Variation, J. Genet 14:47–89.
Wilson, W.A., Harrington, S.E., Woodman, W.L., Lee, M., Sorrells, M.E., and McCouch, S.R., 1998, Can we infer the genome structure of progenitor maize through comparative analysis of rice, maize, and the domesticated panicoids? Genetics. 153:453–473.
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Sorrells, M.E. (2000). The Evolution of Comparative Plant Genetics. In: Gustafson, J.P. (eds) Genomes. Stadler Genetics Symposia Series. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-4235-3_14
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DOI: https://doi.org/10.1007/978-1-4615-4235-3_14
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