This is a preview of subscription content, log in via an institution to check access.
Access this article
Subscribe and save
- Get 10 units per month
- Download Article/Chapter or Ebook
- 1 Unit = 1 Article or 1 Chapter
- Cancel anytime
Buy Now
Price excludes VAT (USA)
Tax calculation will be finalised during checkout.
Instant access to the full article PDF.
Rent this article via DeepDyve
![](http://media.springernature.com/m312/springer-static/image/art%3A10.1038%2Fnbt0208-164/MediaObjects/41587_2008_Article_BFnbt0208164_Fig1_HTML.gif)
References
Giles, J. Nature 438, 900–901 (2005).
Dowell, R.D., Jokerst, R.M., Day, A., Eddy, S.R. & Stein, L. BMC Bioinformatics 2, 7 (2001).
Peri, S. et al. Genome Res. 13, 2363–2371 (2003).
Desiere, F. et al. Genome Biol. 6, R9 (2005).
Martens, L. et al. Proteomics 5, 3537–3545 (2005).
States, D.J. et al. Nat. Biotechnol. 24, 333–338 (2006).
He, F. Mol Cell Proteomics 4, 1841–1848 (2005).
Uhlen, M. et al. Mol. Cell Proteomics 4, 1920–1932 (2005).
Nakajima, D. et al. DNA Res 12, 257–267 (2005).
Mehrle, A. et al. Nucleic Acids Res. 34, D415–D418 (2006).
Kelso, J. et al. Genome Res. 13, 1222–1230 (2003).
Ashburner, M. et al. Nat. Genet. 25, 25–29 (2000).
Garavelli, J.S. Nucleic Acids Res. 31, 499–501 (2003).
Hermjakob, H. et al. Nat. Biotechnol. 22, 177–183 (2004).
Falkner, J.A., Falkner, J.W. & Andrews, P.C. Bioinformatics 23, 262–263 (2007).
Acknowledgements
This project has been funded in part by a grant from the National Institutes of Health Roadmap initiative U54 RR020839 (J.S.B., P.A.C., R.J.C. and A.P.) and a contract N01-HV-28180 from the National Heart Lung and Blood Institute (J.V.E., R.J.C. and A.P.). The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organization imply endorsement by the United States Government.
Author information
Lipoprotein Laboratory, Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, Louisiana 70808, USA.
Authors and Affiliations
Institute of Bioinformatics, International Tech Park, Bangalore, 560 066, India
Suresh Mathivanan, Mukhtar Ahmed, Raghothama Chaerkady, Renu Goel, HC Harsha, Prashantha Hebbar, Kumaran Kandasamy, S Sujatha Mohan, Anuradha Nalli, J Daniel Navarro, Balamurugan Periaswamy, T S Keshava Prasad, Kripa Shankari & K Shivakumar
McKusick-Nathans Institute of Genetic Medicine and the Departments of Pathology and Oncology, Johns Hopkins University, Baltimore, 21205, Maryland, USA
Suresh Mathivanan, Ramars Amanchy, Raghothama Chaerkady, HC Harsha, Kumaran Kandasamy, Henrik Molina, Anuradha Nalli, Balamurugan Periaswamy, Jun Zhong & Akhilesh Pandey
Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, 21205, Maryland, USA
Suresh Mathivanan, Ramars Amanchy, HC Harsha, Gerald Hart, Kumaran Kandasamy, Henrik Molina, Anuradha Nalli, Balamurugan Periaswamy, ** Zhu
Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China
Fuchu He
Molecular Oncology, Independent Max-Planck-Research Group, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, D-82152, Martinsried, Germany
Heiko Hermeking & Peter Jung
South African National Bioinformatics Institute, University of the Western Cape, 7535, Bellville, South Africa
Winston Hide, Oliver Hofmann & Minna Lehvaslaiho
Central Clinical Chemistry Laboratory, Geneva University Hospital, Geneva, Switzerland
Denis F Hochstrasser & Michael Lefevre
Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, 95051, California, USA
David M Horn & Christine A Miller
Department of Pathology and Oncology, The Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, 401 North Broadway, Weinberg 2242, Baltimore, 21231-2410, Maryland, USA
Ralph H Hruban
Protein Technology, Lund University, BMC D13, Lund, Sweden
Peter James & Fredrik Levander
Proteomic Core Facility, Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, 70808, Louisiana, USA
Indu Kheterpal
Department of Human Genome Technology, Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, 292-081,8, Chiba, Japan
Reiko F Kikuno & Osamu Ohara
Division of Molecular Genome Analysis, German Cancer Research Center—DKFZ Heidelberg, Im Neuenheimer Feld 580, 69120, Heidelberg, Germany
Ulrike Korf, Christian Löbke, Alexander Mehrle & Stefan Wiemann
Department of Cell Biology, Max Planck Institute of Biochemistry, D-82152, Martinsried, Germany
Roman Körner
Department of Biochemistry, Yonsei Proteome Research Center and Biomedical Proteome Research Center, Yonsei University, 120-749, Seoul, South Korea
Min-Seok Kwon, Hyoung-Joo Lee & Young-Ki Paik
Department of Environmental Toxicology, University of California, Davis, 95616-8588, California, USA
Young-** Lee & Robert H Rice
Department of Chemistry and Biochemistry and Department of Biological Chemistry, University of California Los Angeles, Los Angeles, 90095, California, USA
Joseph A Loo & Prasanna Ramachandran
EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, CB10 1SD, Cambridge, UK
Lennart Martens
Human Genetics Research Group, IDIBAPS, Faculty of Medicine, University of Barcelona, Casanova 143, 08023, Barcelona, Spain
Juan Martinez-Heredia, Rafael Oliva & José-Manuel Vidal-Taboada
Bioinformatics Program, University of Michigan, Ann Arbor, 48109, Michigan, USA
Rajasree Menon & David J States
Mosaiques Diagnostics & Therapeutics AG, Hanover, Mellendorfer Strasse, 7-9D-30625, Hannover, Germany
Harald Mischak & Petra Zurbig
Cancer Program, Hospital For Sick Children and McLaughlin Centre for Molecular Medicine, 101 College Street, East Tower, Toronto, M5G 1L7, Ontario, Canada
Michael F Moran
Banting and Best Department of Medical Research and Department of Molecular and Medical Genetics, University of Toronto, 112 College St., Toronto, M5G 1L6, Ontario, Canada
Michael F Moran
Joint Proteomics Laboratory, Ludwig Institute for Cancer Research (Melbourne Branch) and The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3050, Victoria, Australia
Robert Moritz & Richard J Simpson
INRA, UR 370, Proteomics Platform, Saint Genès Champanelle, 63122, France
Martine Morzel
Department of Chemistry, W.M. Keck FT-ICR Mass Spectrometry Laboratory, North Carolina State University, Raleigh, 27695, North Carolina, USA
David C Muddiman
Laboratory for Immunogenomics, RIKEN Research Center for Allergy and Immunology, RIKEN Yokohama Institute, 2nd floor, North Research Building, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, 230-0045, Kanagawa, Japan
Osamu Ohara
Department of Internal Medicine, Center for Computational Medicine and Biology and Proteomics Alliance for Cancer Research, University of Michigan, Ann Arbor, 48109-2218, Michigan, USA
Gilbert S Omenn
Medical Proteomics Laboratory, Institute of Medical Science, University of Tokyo, Minato-ku, 108-8639, Tokyo, Japan
Masaaki Oyama & Sumio Sugano
European Molecular Biology Laboratory, Cell Biology and Biophysics Programme Meyerhofstrasse 1, D-69117, Heidelberg, Germany
Rainer Pepperkok
Center for Applied Proteomics and Molecular Medicine, George Mason University, Manassas, 20110, Virginia, USA
Emanuel F Petricoin
Environmental Molecular Science Laboratory and Biological Sciences Division, Pacific Northwest National Laboratory, Richland, 99352, Washington, USA
Samuel O Purvine & Richard D Smith
Department of the Biological and Environmental Sciences, Division of Biochemistry, University of Helsinki, PO Box 56, Viikinkaari 9, FI-00014, Finland
Ragna H Ronnholm & Maarit Takatalo
Institute of Medical Technology, University of Tampere, Finn-Medi2, 5th floor, Biokatu 8, Tampere, FI-33014, Finland
Johanna Salonen & Mauno Vihinen
Department of Pathology, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, David Geffen School of Medicine at UCLA, Torrance, 90502-2064, California, USA
Beerelli Seshi
Centre for Cellular and Molecular Biology, Uppal Road, 500 007, Hyderabad, India
Ravi Sirdeshmukh
Medical Molecular Biology Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand
Visith Thongboonkerd
Laboratory of Proteomics and Analytical Technologies, SAIC-Frederick Inc., NCI-Frederick, Frederick, 21702, Maryland, USA
Timothy D Veenstra & Ming Zhou
Kennedy Institute of Rheumatology, Faculty of Medicine, Imperial College, South Kensington Campus, SW7 2AZ, London, UK
Robin Wait
- Suresh Mathivanan
You can also search for this author in PubMed Google Scholar
- Mukhtar Ahmed
You can also search for this author in PubMed Google Scholar
- Natalie G Ahn
You can also search for this author in PubMed Google Scholar
- Hainard Alexandre
You can also search for this author in PubMed Google Scholar
- Ramars Amanchy
You can also search for this author in PubMed Google Scholar
- Philip C Andrews
You can also search for this author in PubMed Google Scholar
- Joel S Bader
You can also search for this author in PubMed Google Scholar
- Brian M Balgley
You can also search for this author in PubMed Google Scholar
- Marcus Bantscheff
You can also search for this author in PubMed Google Scholar
- Keiryn L Bennett
You can also search for this author in PubMed Google Scholar
- Erik Björling
You can also search for this author in PubMed Google Scholar
- Blagoy Blagoev
You can also search for this author in PubMed Google Scholar
- Ron Bose
You can also search for this author in PubMed Google Scholar
- Samir K Brahmachari
You can also search for this author in PubMed Google Scholar
- Alma S Burlingame
You can also search for this author in PubMed Google Scholar
- Xosé R Bustelo
You can also search for this author in PubMed Google Scholar
- Gerard Cagney
You can also search for this author in PubMed Google Scholar
- Greg T Cantin
You can also search for this author in PubMed Google Scholar
- Helene L Cardasis
You can also search for this author in PubMed Google Scholar
- Julio E Celis
You can also search for this author in PubMed Google Scholar
- Raghothama Chaerkady
You can also search for this author in PubMed Google Scholar
- Feixia Chu
You can also search for this author in PubMed Google Scholar
- Philip A Cole
You can also search for this author in PubMed Google Scholar
- Catherine E Costello
You can also search for this author in PubMed Google Scholar
- Robert J Cotter
You can also search for this author in PubMed Google Scholar
- David Crockett
You can also search for this author in PubMed Google Scholar
- James P DeLany
You can also search for this author in PubMed Google Scholar
- Angelo M De Marzo
You can also search for this author in PubMed Google Scholar
- Leroi V DeSouza
You can also search for this author in PubMed Google Scholar
- Eric W Deutsch
You can also search for this author in PubMed Google Scholar
- Eric Dransfield
You can also search for this author in PubMed Google Scholar
- Gerard Drewes
You can also search for this author in PubMed Google Scholar
- Arnaud Droit
You can also search for this author in PubMed Google Scholar
- Michael J Dunn
You can also search for this author in PubMed Google Scholar
- Kojo Elenitoba-Johnson
You can also search for this author in PubMed Google Scholar
- Rob M Ewing
You can also search for this author in PubMed Google Scholar
- Jennifer Van Eyk
You can also search for this author in PubMed Google Scholar
- Vitor Faca
You can also search for this author in PubMed Google Scholar
- Jayson Falkner
You can also search for this author in PubMed Google Scholar
- **angming Fang
You can also search for this author in PubMed Google Scholar
- Catherine Fenselau
You can also search for this author in PubMed Google Scholar
- Daniel Figeys
You can also search for this author in PubMed Google Scholar
- Pierre Gagné
You can also search for this author in PubMed Google Scholar
- Cecilia Gelfi
You can also search for this author in PubMed Google Scholar
- Kris Gevaert
You can also search for this author in PubMed Google Scholar
- Jeffrey M Gimble
You can also search for this author in PubMed Google Scholar
- Florian Gnad
You can also search for this author in PubMed Google Scholar
- Renu Goel
You can also search for this author in PubMed Google Scholar
- Pavel Gromov
You can also search for this author in PubMed Google Scholar
- Samir M Hanash
You can also search for this author in PubMed Google Scholar
- William S Hancock
You can also search for this author in PubMed Google Scholar
- HC Harsha
You can also search for this author in PubMed Google Scholar
- Gerald Hart
You can also search for this author in PubMed Google Scholar
- Faith Hays
You can also search for this author in PubMed Google Scholar
- Fuchu He
You can also search for this author in PubMed Google Scholar
- Prashantha Hebbar
You can also search for this author in PubMed Google Scholar
- Kenny Helsens
You can also search for this author in PubMed Google Scholar
- Heiko Hermeking
You can also search for this author in PubMed Google Scholar
- Winston Hide
You can also search for this author in PubMed Google Scholar
- Karin Hjernø
You can also search for this author in PubMed Google Scholar
- Denis F Hochstrasser
You can also search for this author in PubMed Google Scholar
- Oliver Hofmann
You can also search for this author in PubMed Google Scholar
- David M Horn
You can also search for this author in PubMed Google Scholar
- Ralph H Hruban
You can also search for this author in PubMed Google Scholar
- Nieves Ibarrola
You can also search for this author in PubMed Google Scholar
- Peter James
You can also search for this author in PubMed Google Scholar
- Ole N Jensen
You can also search for this author in PubMed Google Scholar
- Pia Hønnerup Jensen
You can also search for this author in PubMed Google Scholar
- Peter Jung
You can also search for this author in PubMed Google Scholar
- Kumaran Kandasamy
You can also search for this author in PubMed Google Scholar
- Indu Kheterpal
You can also search for this author in PubMed Google Scholar
- Reiko F Kikuno
You can also search for this author in PubMed Google Scholar
- Ulrike Korf
You can also search for this author in PubMed Google Scholar
- Roman Körner
You can also search for this author in PubMed Google Scholar
- Bernhard Kuster
You can also search for this author in PubMed Google Scholar
- Min-Seok Kwon
You can also search for this author in PubMed Google Scholar
- Hyoung-Joo Lee
You can also search for this author in PubMed Google Scholar
- Young-** Lee
You can also search for this author in PubMed Google Scholar
- Michael Lefevre
You can also search for this author in PubMed Google Scholar
- Minna Lehvaslaiho
You can also search for this author in PubMed Google Scholar
- Pierre Lescuyer
You can also search for this author in PubMed Google Scholar
- Fredrik Levander
You can also search for this author in PubMed Google Scholar
- Megan S Lim
You can also search for this author in PubMed Google Scholar
- Christian Löbke
You can also search for this author in PubMed Google Scholar
- Joseph A Loo
You can also search for this author in PubMed Google Scholar
- Matthias Mann
You can also search for this author in PubMed Google Scholar
- Lennart Martens
You can also search for this author in PubMed Google Scholar
- Juan Martinez-Heredia
You can also search for this author in PubMed Google Scholar
- Mark McComb
You can also search for this author in PubMed Google Scholar
- James McRedmond
You can also search for this author in PubMed Google Scholar
- Alexander Mehrle
You can also search for this author in PubMed Google Scholar
- Rajasree Menon
You can also search for this author in PubMed Google Scholar
- Christine A Miller
You can also search for this author in PubMed Google Scholar
- Harald Mischak
You can also search for this author in PubMed Google Scholar
- S Sujatha Mohan
You can also search for this author in PubMed Google Scholar
- Riaz Mohmood
You can also search for this author in PubMed Google Scholar
- Henrik Molina
You can also search for this author in PubMed Google Scholar
- Michael F Moran
You can also search for this author in PubMed Google Scholar
- James D Morgan
You can also search for this author in PubMed Google Scholar
- Robert Moritz
You can also search for this author in PubMed Google Scholar
- Martine Morzel
You can also search for this author in PubMed Google Scholar
- David C Muddiman
You can also search for this author in PubMed Google Scholar
- Anuradha Nalli
You can also search for this author in PubMed Google Scholar
- J Daniel Navarro
You can also search for this author in PubMed Google Scholar
- Thomas A Neubert
You can also search for this author in PubMed Google Scholar
- Osamu Ohara
You can also search for this author in PubMed Google Scholar
- Rafael Oliva
You can also search for this author in PubMed Google Scholar
- Gilbert S Omenn
You can also search for this author in PubMed Google Scholar
- Masaaki Oyama
You can also search for this author in PubMed Google Scholar
- Young-Ki Paik
You can also search for this author in PubMed Google Scholar
- Kyla Pennington
You can also search for this author in PubMed Google Scholar
- Rainer Pepperkok
You can also search for this author in PubMed Google Scholar
- Balamurugan Periaswamy
You can also search for this author in PubMed Google Scholar
- Emanuel F Petricoin
You can also search for this author in PubMed Google Scholar
- Guy G Poirier
You can also search for this author in PubMed Google Scholar
- T S Keshava Prasad
You can also search for this author in PubMed Google Scholar
- Samuel O Purvine
You can also search for this author in PubMed Google Scholar
- B Abdul Rahiman
You can also search for this author in PubMed Google Scholar
- Prasanna Ramachandran
You can also search for this author in PubMed Google Scholar
- Y L Ramachandra
You can also search for this author in PubMed Google Scholar
- Robert H Rice
You can also search for this author in PubMed Google Scholar
- Jens Rick
You can also search for this author in PubMed Google Scholar
- Ragna H Ronnholm
You can also search for this author in PubMed Google Scholar
- Johanna Salonen
You can also search for this author in PubMed Google Scholar
- Jean-Charles Sanchez
You can also search for this author in PubMed Google Scholar
- Thierry Sayd
You can also search for this author in PubMed Google Scholar
- Beerelli Seshi
You can also search for this author in PubMed Google Scholar
- Kripa Shankari
You can also search for this author in PubMed Google Scholar
- Shi Jun Sheng
You can also search for this author in PubMed Google Scholar
- Vivekananda Shetty
You can also search for this author in PubMed Google Scholar
- K Shivakumar
You can also search for this author in PubMed Google Scholar
- Richard J Simpson
You can also search for this author in PubMed Google Scholar
- Ravi Sirdeshmukh
You can also search for this author in PubMed Google Scholar
- K W Michael Siu
You can also search for this author in PubMed Google Scholar
- Jeffrey C Smith
You can also search for this author in PubMed Google Scholar
- Richard D Smith
You can also search for this author in PubMed Google Scholar
- David J States
You can also search for this author in PubMed Google Scholar
- Sumio Sugano
You can also search for this author in PubMed Google Scholar
- Matthew Sullivan
You can also search for this author in PubMed Google Scholar
- Giulio Superti-Furga
You can also search for this author in PubMed Google Scholar
- Maarit Takatalo
You can also search for this author in PubMed Google Scholar
- Visith Thongboonkerd
You can also search for this author in PubMed Google Scholar
- Jonathan C Trinidad
You can also search for this author in PubMed Google Scholar
- Mathias Uhlen
You can also search for this author in PubMed Google Scholar
- Joël Vandekerckhove
You can also search for this author in PubMed Google Scholar
- Julian Vasilescu
You can also search for this author in PubMed Google Scholar
- Timothy D Veenstra
You can also search for this author in PubMed Google Scholar
- José-Manuel Vidal-Taboada
You can also search for this author in PubMed Google Scholar
- Mauno Vihinen
You can also search for this author in PubMed Google Scholar
- Robin Wait
You can also search for this author in PubMed Google Scholar
- **aoyue Wang
You can also search for this author in PubMed Google Scholar
- Stefan Wiemann
You can also search for this author in PubMed Google Scholar
- Billy Wu
You can also search for this author in PubMed Google Scholar
- Tao Xu
You can also search for this author in PubMed Google Scholar
- John R Yates
You can also search for this author in PubMed Google Scholar
- Jun Zhong
You can also search for this author in PubMed Google Scholar
- Ming Zhou
You can also search for this author in PubMed Google Scholar
- Yun** Zhu
You can also search for this author in PubMed Google Scholar
- Petra Zurbig
You can also search for this author in PubMed Google Scholar
- Akhilesh Pandey
You can also search for this author in PubMed Google Scholar
Supplementary information
Supplementary Text and Figures
Supplementary Figures 1,2 (PDF 1146 kb)
Rights and permissions
About this article
Cite this article
Mathivanan, S., Ahmed, M., Ahn, N. et al. Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 26, 164–167 (2008). https://doi.org/10.1038/nbt0208-164
Issue Date:
DOI: https://doi.org/10.1038/nbt0208-164
- Springer Nature America, Inc.
Share this article
Anyone you share the following link with will be able to read this content:
Sorry, a shareable link is not currently available for this article.
Provided by the Springer Nature SharedIt content-sharing initiative