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Conformational Analysis, Molecular Modeling, and Quantitative Structure–Activity Relationship Studies of Agents for the Inhibition of Astrocytic Chloride Transport

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Abstract

Molecular modeling studies were carried out on a series of 1-oxoisoindolines which are pharmacologically active as inhibitors of astrocytic chloride transport. Conformational analysis revealed that the halogen substituent exerted a pronounced steric directing effect on the acid side chain. The 4-substituted analogs apparently provided for the best spatial arrangement of pharamacophoric elements of the molecules. Conventional quantitative structure-activity relationship (QSAR) studies using lipophilic and dipole moment characteristics of the molecules as physical descriptor variables in the regression equation yielded a statistically significant model. Comparative molecular field analysis (CoMFA) was utilized as a three-dimensional QSAR technique to explore changes in the steric and electrostatic fields of the molecules that can account for differences in biological activity values. A highly predictive model was attained which supported the results from the qualitative and conventional quantitative structure-activity relationship analyses. These modeling techniques represent the evolutionary process by which structure-activity methods were employed to aid in the development of novel more potent inhibitors of astrocytic chloride transport.

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REFERENCES

  1. E. J. Cragoe, N. P. Gould, O. W. Woltersdorf, C. Ziegler, R. S. Bourke, L. R. Nelson, H. K. Kimelberg, J. B. Waldman, A. J. Popp, and N. Sedransk. Agents for the treatment of brain injury. 1. (Aryloxy)alkanoic acids. J. Med. Chem. 25:567–579 (1982).

    Google Scholar 

  2. H. K. Kimelberg and M. V. Frangakis. Furosemide-and bumetanide-sensitive ion transport and volume control in primary astrocyte cultures from rat brain. Brain Res. 361:125–134 (1985).

    Google Scholar 

  3. H. K. Kimelberg, J. W. Rose, K. D. Barron, R. A. Waniewski, and E. J. Cragoe. Astrocytic swelling in traumatic-hypoxic brain injury: Beneficial effects of an inhibitor of anion exchange transport and glutamate uptake in glial cells. Mol. Chem. Neuropathol. 11 (1):1–31 (1989).

    Google Scholar 

  4. D. P. Becker, D. J. Miller, J. D. Ward, R. P. Greenberg, H. F. Young, and R. Sakalas. The outcome from severe head injury with early diagnosis and intensive management. J. Neurosurg. 47:491–502 (1977).

    Google Scholar 

  5. L. F. Marshall, R. W. Smith, and H. M. Shapiro. The outcome with aggressive treatment in severe head injuries. II. Acute and chronic barbiturate administration in the management of head injury. J. Neurosurg. 50:26–30 (1979).

    Google Scholar 

  6. B. K. Siesjo. Cerebral circulation and metabolism. J. Neurosurg. 60:883–908 (1984).

    Google Scholar 

  7. H. Koga, H. Sato, T. Dan, and B. Aoki. Studies on uricosuric diuretics. 4. Three-dimensional structure-activity relationships and receptor map** of (aryloxy)acetic acid diuretics. J. Med. Chem. 34:2702–2708 (1991).

    Google Scholar 

  8. C. L. Waller, S. D. Wyrick, H. M. Park, W. E. Kemp, and F. T. Smith. Effects of [(N-alkyl-1-oxo-1H,3H-isoindolin-5-yl)oxy]alkanoic acids on chloride transport in primary astroglial cultures. J. Pharm. Sci. (in press).

  9. S. D. Wyrick, F. T. Smith, W. E. Kemp, and A. A. Grippo. Effects of [(N-alkyl-1,3-dioxo-1H,3H-isoindolin-5-yl)oxy]alkanoic acids, [(N-alkyl-1-oxo-1H,3H-isoindolin-5-yl)oxy]butanoic acids, and related derivatives on chloride influx in primary astroglial cultures. J. Med. Chem. 30:1798–1806 (1987).

    Google Scholar 

  10. SYBYL 5.4, TRIPOS Associates, St. Louis, MO (1991).

  11. N. Allinger et al. MMP2(MM2-87) software, Molecular Design, Ltd.

  12. StatView 512+ software package, Brain Power, Inc., Calabasas, CA (1986).

  13. C. Still and K. Steliou et al. MODEL, Version 2.91, K, Quebec, Canada.

  14. A. J. Hoffman and P. S. Charifson. MMSYB software (unreleased) (1988).

  15. A. Leo, C. Hansch, and D. Elkins. Partition coefficients and their uses. Chem. Rev. 71:525–616 (1971).

    Google Scholar 

  16. R. D. Cramer, J. D. Bunce, D. E. Patterson, and I. E. Frank. Crossvalidation, bootstrap**, and partial least squares compared with multiple regression in conventional QSAR studies. Quant. Struct.-Act. Relat. 7:18–25 (1988).

    Google Scholar 

  17. S. Wold, A. Ruhe, H. Wold, and W. J. Dunn. The covariance problem in linear regression. The partial least squares (PLS) approach to generalized inverses. SIAM J. Sci. Stat. Comp. 5 (3):735–743 (1984).

    Google Scholar 

  18. G. R. Marshall. Structure-activity studies: A three-dimensional probe of receptor specificity in macromolecular structure and specificity: Computer-assisted modeling and applications. Ann. N.Y. Acad. Sci. 439:162–169 (1985).

    Google Scholar 

  19. P. S. Charifson, J. P. Bowen, S. D. Wyrick, A. J. Hoffman, M. Cory, A. T. McPhail, and R. B. Mailman. Conformational analysis and molecular modeling of 1-phenyl, 4-phenyl, and 1-benzyl-1,2,3,4,-tetratrydroisoquinolines as D1 dopamine receptor ligands. J. Med. Chem. 32:050–2058 (1989).

    Google Scholar 

  20. R. C. Young, G. J. Durant, J. C. Emmett, C. R. Ganellin, M. J. Graham, R. C. Mitchell, H. D. Prain, and M. L. Roantree. Dipole moment in relation to H2 receptor histamine antagonist activity for cimetidine analogs. J. Med. Chem. 29:41–49 (1986).

    Google Scholar 

  21. Y. Inami, T. Tomita, and Y. Terada. Quantitative structure-activity relationship analysis of phencyclidine derivatives. I. Chem. Pharm. Bull. 39 (6):1426–1429 (1991).

    Google Scholar 

  22. J. G. Topliss, and R. P. Edwards. Chance factors in QSAR studies. In E. C. Olson and R. E. Christofferson (eds.), Computer-Assisted Drug Design, ACS Symposium Series 112, American Chemical Society, Washington, DC, 1979, pp. 131–145.

    Google Scholar 

  23. R. D. Cramer and J. D. Bunce. The dylomms method: Initial results from a comparative study of approaches to 3D QSAR. In D. Hadzi and B. Jerman-Blazic (eds.), QSAR in Drug Design and Toxicology, Elsevier Science, Amsterdam, 1987, pp. 3–12.

    Google Scholar 

  24. R. D. Cramer, D. E. Patterson, and J. D. Bunce. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 110:5959–5967 (1988).

    Google Scholar 

  25. R. D. Cramer, D. E. Patterson, and J. D. Bunce. Recent advances in comparative molecular field analysis (CoMFA). In J.-L. Fauchere (ed.), QSAR: Quantative Structure-Activity Relationships in Drug Design, Alan R. Liss, New York, 1989, pp. 161–165.

    Google Scholar 

  26. K. H. Kim and Y. C. Martin. Direct prediction of dissociation constants (pKa's) of clonidine-like imidazolines, 2-substituted imidazoles, and 1-methyl-2-substituted-imidazoles from 3D structure using a comparative molecular field analysis (CoMFA) approach. J. Med. Chem. 34:2056–2060 (1991).

    Google Scholar 

  27. F. I. Carroll, Y. Gao, M. A. Rahman, P. Abraham, K. Parham, A. H. Lewin, J. W. Boja, and M. J. Kuhar. Synthesis, ligand binding, QSAR, and CoMFA study of 3β-(p-substituted phenyl) tropane-2β-carboxylic acid methyl esters. J. Med. Chem. 34:2719–2725 (1991).

    Google Scholar 

  28. J.-P. Bjorkroth, T. A., Pakkanen, J. Lindroos, E. Pohjala, H. Hanhijarvi, L. Lauren, R. Hannuniemi, A. Juhakoski, K. Kippo, and T. Kleimola. Comparative molecular field analysis of some clodronic acid esters. J. Med. Chem. 34:2338–2343 (1991).

    Google Scholar 

  29. B. F. Thomas, D. R. Compton, B. R. Martin, and S. F. Semus. Modeling the cannabinoid receptor: A three-dimensional quantitative structure-activity analysis. Mol. Pharmacol. 40:656–665 (1991).

    Google Scholar 

  30. C. L. Waller and J. D. McKinney. Comparative molecular field analysis of polyhalogenated dibenzo-p-dioxins, dibenzofurans, and biphenyls. J. Med. Chem. (1992).

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Waller, C.L., Wyrick, S.D., Kemp, W.E. et al. Conformational Analysis, Molecular Modeling, and Quantitative Structure–Activity Relationship Studies of Agents for the Inhibition of Astrocytic Chloride Transport. Pharm Res 11, 47–53 (1994). https://doi.org/10.1023/A:1018937425823

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