Log in

Clinical Genetic Testing in Kidney Disease and Transplantation: Logistical, Ethical, Legal, and Social Considerations

  • Published:
Current Transplantation Reports Aims and scope Submit manuscript

Abstract

Purpose of Review

The role of genetics in renal disorders is being increasingly recognized, prompting the need to describe and address barriers to meaningful implementation of genetic testing in clinical care.

Recent Findings

The rapid expansion in accessibility and decreased cost of sequencing technologies has prompted increased identification of monogenic contributors to kidney disease and demonstration of the high yield of genetic testing in renal cohorts. Genetic testing in kidney disease and transplantation offers meaningful applications, including those relating to diagnosis, prognosis, management, and implications for family members and potential living donors. However, clinical implementation raises notable logistical, ethical, legal, and social considerations.

Summary

Chief among barriers and concerns are difficulties in variant interpretation, lack of adequate clinician training and genetic counseling availability, disparities in composition of reference databases, considerations in obtaining informed consent and returning genetic results, and concerns relating to privacy and legal protections. These considerations are not discrete and the complex issues among them overlap considerably, requiring multifaceted and adaptive interventions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

ACA:

Affordable Care Act

ACMG:

American College of Medical Genetics and Genomics

ADA:

Americans with Disabilities Act

AMP:

Association for Molecular Pathology

APOLLO:

APOL1 Long-term Kidney Transplantation Outcomes Network

APOL1:

Apolipoprotein L1

CKD:

Chronic kidney disease

ESKD:

End-stage kidney disease

GINA:

Genetic Information Nondiscrimination Act

HIPAA:

Health Insurance Portability and Accountability Act

MPS:

Massively parallel sequencing

RV:

Risk variant

US:

United States

VUS:

Variants of unknown significance

References

  1. Marin EP, Cohen E, Dahl N. Clinical applications of genetic discoveries in kidney transplantation: a review. Kidney360. 2020;1(4):300–5. Review of applications of genetic testing in care of transplant kidney recipients and living donors.

    Article  PubMed  PubMed Central  Google Scholar 

  2. Dragojlovic N, Kopac N, Borle K, Tandun R, Salmasi S, Ellis U, et al. Utilization and uptake of clinical genetics services in high-income countries: a sco** review. Health Policy (New York). 2021;125(7):877–87.

    Article  Google Scholar 

  3. Groopman EE, Rasouly HM, Gharavi AG. Genomic medicine for kidney disease. Nat Rev Nephrol. 2018;14(2):83–104.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. National Institute of Diabetes and Digestive and Kidney Diseases. Kidney disease statistics for the United States [Internet]. Available from: https://www.niddk.nih.gov/health-information/health-statistics/kidney-disease

  5. Jager KJ, Kovesdy C, Langham R, Rosenberg M, Jha V, Zoccali C. A single number for advocacy and communication—worldwide more than 850 million individuals have kidney diseases. Kidney Int. 2019;96(5):1048–50.

    Article  PubMed  Google Scholar 

  6. Cocchi E, Nestor JG, Gharavi AG. Clinical genetic screening in adult patients with kidney disease. Clin J Am Soc Nephrol. 2020;15(10):1497–510.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Groopman EE, Marasa M, Cameron-Christie S, Petrovski S, Aggarwal VS, Milo-Rasouly H, et al. Diagnostic utility of exome sequencing for kidney disease. N Engl J Med. 2019;380(2):142–51.

    Article  CAS  PubMed  Google Scholar 

  8. Köttgen A, Cornec-Le Gall E, Halbritter J, Kiryluk K, Mallett AJ, Parekh RS, et al. Genetics in chronic kidney disease: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) controversies conference. Kidney Int. 2022;101(6):1126–41. Overview of the current and emerging role of genetics in kidney disease, with proposed strategies to improve implementation and future areas of research.

    Article  Google Scholar 

  9. Rasouly HM, Groopman EE, Heyman-Kantor R, Fasel DA, Mitrotti A, Westland R, et al. The burden of candidate pathogenic variants for kidney and genitourinary disorders emerging from exome sequencing. Ann Intern Med. 2019;170(1):11.

    Article  PubMed  Google Scholar 

  10. Verbitsky M, Krishnamurthy S, Krithivasan P, Hughes D, Khan A, Marasà M, et al. Genomic disorders in CKD across the lifespan. J Am Soc Nephrol. 2023;34(4):607–18.

    Article  PubMed  Google Scholar 

  11. e Pinto VF, Prochnow C, Kemppainen JL, Lisi EC, Steyermark JM, Kruisselbrink TM, et al. Genomics integration into nephrology practice. Kidney Med. 2021;3(5):785–98.

    Article  Google Scholar 

  12. Thomas CP, Freese ME, Ounda A, Jetton JG, Holida M, Noureddine L, et al. Initial experience from a renal genetics clinic demonstrates a distinct role in patient management. Genet Med. 2020;22(6):1025–35.

    Article  PubMed  PubMed Central  Google Scholar 

  13. Stein Q, Westemeyer M, Darwish T, Pitman T, Hager M, Tabriziani H, et al. Genetic counseling in kidney disease: a perspective. Kidney Med. 2023;5(7):100668.

    Article  PubMed  PubMed Central  Google Scholar 

  14. Lata S, Marasa M, Li Y, Fasel DA, Groopman E, Jobanputra V, et al. Whole-exome sequencing in adults with chronic kidney disease. Ann Intern Med. 2018;168(2):100.

    Article  PubMed  Google Scholar 

  15. Nestor JG, Groopman EE, Gharavi AG. Towards precision nephrology: the opportunities and challenges of genomic medicine. J Nephrol. 2018;31(1):47–60.

    Article  CAS  PubMed  Google Scholar 

  16. Claus LR, Snoek R, Knoers NVAM, van Eerde AM. Review of genetic testing in kidney disease patients: diagnostic yield of single nucleotide variants and copy number variations evaluated across and within kidney phenotype groups. Am J Med Genet C: Semin Med Genet. 2022;190(3):358–76.

    Article  CAS  PubMed  Google Scholar 

  17. Hay E, Cullup T, Barnicoat A. A practical approach to the genomics of kidney disorders. Pediatr Nephrol. 2022;37(1):21–35.

    Article  PubMed  Google Scholar 

  18. Bogyo K, Vena N, May H, Rasouly HM, Marasa M, Sanna-Cherchi S, et al. Incorporating genetics services into adult kidney disease care. Am J Med Genet C: Semin Med Genet. 2022;190(3):289–301.

    Article  CAS  PubMed  Google Scholar 

  19. Jayasinghe K, Stark Z, Kerr PG, Gaff C, Martyn M, Whitlam J, et al. Clinical impact of genomic testing in patients with suspected monogenic kidney disease. Genet Med. 2021;23(1):183–91.

    Article  PubMed  Google Scholar 

  20. Connaughton DM, Kennedy C, Shril S, Mann N, Murray SL, Williams PA, et al. Monogenic causes of chronic kidney disease in adults. Kidney Int. 2019;95(4):914–28.

    Article  PubMed  PubMed Central  Google Scholar 

  21. Mann N, Braun DA, Amann K, Tan W, Shril S, Connaughton DM, et al. Whole-exome sequencing enables a precision medicine approach for kidney transplant recipients. J Am Soc Nephrol. 2019;30(2):201–15.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Jayasinghe K, Quinlan C, Stark Z, Patel C, Mallawaarachchi A, Wardrop L, et al. Renal genetics in Australia: kidney medicine in the genomic age. Nephrology. 2019;24(3):279–86.

    Article  PubMed  Google Scholar 

  23. Goddard KAB, Lee K, Buchanan AH, Powell BC, Hunter JE. Establishing the medical actionability of genomic variants. Annu Rev Genomics Hum Genet. 2022;23(1):173–92.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Knoers N, Antignac C, Bergmann C, Dahan K, Giglio S, Heidet L, et al. Genetic testing in the diagnosis of chronic kidney disease: recommendations for clinical practice. Nephrol Dial Transplant. 2022;37(2):239–54. Description of MPS-based sequencing modalities, as well as their indications and applications in CKD, providing clinical guidance for the nephrologist.

    Article  PubMed  Google Scholar 

  25. Becherucci F, Landini S, Palazzo V, Cirillo L, Raglianti V, Lugli G, et al. A clinical workflow for cost-saving high-rate diagnosis of genetic kidney diseases. J Am Soc Nephrol. 2023;34(4):706–20.

    Article  PubMed  Google Scholar 

  26. Tan XY, Borden C, Roberts MB, Mazzola S, Tan QKG, Fatica R, et al. Renal genetics clinic: 3-year experience in the Cleveland Clinic. Kidney Med. 2023;5(2):100585. Report on retrospective findings and insights from three-year experience of the largest single-center study of an outpatient renal genetics clinic in the US.

    Article  PubMed  Google Scholar 

  27. El Ters M, e Pinto VF, Prochnow C, Schinstock C, Dean P, Kemppainen J, et al. Incorporation of genetic studies in the kidney transplant evaluation clinic: the value of a multidisciplinary approach. Transplantation. 2023;107(4):952–60.

    Article  PubMed  Google Scholar 

  28. Lundquist AL, Pelletier RC, Leonard CE, Williams WW, Armstrong KA, Rehm HL, et al. From theory to reality: establishing a successful kidney genetics clinic in the outpatient setting. Kidney360. 2020;1(10):1099–106.

    Article  PubMed  PubMed Central  Google Scholar 

  29. Marasa M, Ahram DF, Rehman AU, Mitrotti A, Abhyankar A, Jain NG, et al. Implementation and feasibility of clinical genome sequencing embedded into the outpatient nephrology care for patients with proteinuric kidney disease. Kidney Int Rep. 2023;8(8):1638–47.

    Article  PubMed  PubMed Central  Google Scholar 

  30. Nestor JG. Assessing physician needs for the implementation of personalized care. Kidney Int Rep. 2021;6(2):243–5.

    Article  PubMed  Google Scholar 

  31. Gale DP, Mallett A, Patel C, Sneddon TP, Rehm HL, Sampson MG, et al. Diagnoses of uncertain significance: kidney genetics in the 21st century. Nat Rev Nephrol. 2020;16(11):616–8.

    Article  PubMed  Google Scholar 

  32. Franceschini N, Frick A, Kopp JB. Genetic testing in clinical settings. Am J Kidney Dis. 2018;72(4):569–81.

    Article  PubMed  PubMed Central  Google Scholar 

  33. Mallett AJ, Knoers N, Sayer J, Stark Z. Clinical versus research genomics in kidney disease. Nat Rev Nephrol. 2021;17(9):570–1.

    Article  PubMed  Google Scholar 

  34. Nestor JG. Clinical integration of genomic testing in kidney transplantation clinics. Transplantation. 2023;107(4):820–1.

    Article  PubMed  Google Scholar 

  35. Jayaraman P, Crouse A, Nadkarni G, Might M. A primer in precision nephrology: optimizing outcomes in kidney health and disease through data-driven medicine. Kidney360. 2023;4(4):e544–54.

    Article  PubMed  PubMed Central  Google Scholar 

  36. Amlie-Wolf L, Baker L, Hiddemen O, Thomas M, Burke C, Gluck C, et al. Novel genetic testing model: a collaboration between genetic counselors and nephrology. Am J Med Genet A. 2021;185(4):1142–50.

    Article  PubMed  Google Scholar 

  37. Nestor JG, Marasa M, Milo-Rasouly H, Groopman EE, Husain SA, Mohan S, et al. Pilot study of return of genetic results to patients in adult nephrology. Clin J Am Soc Nephrol. 2020;15(5):651–64.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Elhassan EAE, Murray SL, Connaughton DM, Kennedy C, Cormican S, Cowhig C, et al. The utility of a genetic kidney disease clinic employing a broad range of genomic testing platforms: experience of the Irish Kidney Gene Project. J Nephrol. 2022;35(6):1655–65.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  39. Mrug M, Bloom MS, Seto C, Malhotra M, Tabriziani H, Gauthier P, et al. Genetic testing for chronic kidney diseases: clinical utility and barriers perceived by nephrologists. Kidney Med. 2021;3(6):1050–6.

    Article  PubMed  PubMed Central  Google Scholar 

  40. Jayasinghe K, Quinlan C, Mallett AJ, Kerr PG, McClaren B, Nisselle A, et al. Attitudes and practices of Australian nephrologists toward implementation of clinical genomics. Kidney Int Rep. 2021;6(2):272–83.

    Article  PubMed  Google Scholar 

  41. Soraru J, Chakera A, Isbel N, Mallawaarachichi A, Rogers N, Trnka P, et al. The evolving role of diagnostic genomics in kidney transplantation. Kidney Int Rep. 2022;7(8):1758–71.

    Article  PubMed  PubMed Central  Google Scholar 

  42. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405–24.

    Article  PubMed  PubMed Central  Google Scholar 

  43. National Library of Medicine: National Center of Biotechnology Information. ClinVar [Internet]. Available from: https://www.ncbi.nlm.nih.gov/clinvar/

  44. OMIM: Online Mendelian Inheritance in Man [Internet]. Available from: https://www.omim.org

  45. ClinGen: Clinical Genome Resource [Internet]. Available from: https://clinicalgenome.org

  46. CPIC: Clinical Pharmacogenetics Implementation Consortium [Internet]. Available from: https://cpicpgx.org

  47. Fishman CE, Mohebnasab M, van Setten J, Zanoni F, Wang C, Deaglio S, et al. Genome-Wide Study Updates in the International Genetics and Translational Research in Transplantation Network (iGeneTRAiN). Front Genet. 2019;10

  48. Miller DT, Lee K, Abul-Husn NS, Amendola LM, Brothers K, Chung WK, et al. ACMG SF v3.2 list for reporting of secondary findings in clinical exome and genome sequencing: a policy statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med. 2023;25(8):100866.

    Article  CAS  PubMed  Google Scholar 

  49. Rasouly HM, Balderes O, Marasa M, Fernandez H, Lipton M, Lin F, et al. The effect of genetic education on the referral of patients to genetic evaluation: findings from a national survey of nephrologists. Genet Med. 2023;25(5):100814. A survey of nephrologists in the US demonstrating association between reported lower familiarity with kidney-related genetics and lower number of patients referred for genetic evaluation.

    Article  CAS  PubMed  Google Scholar 

  50. Doreille A, Villié P, Mesnard L. National survey on genetic test prescription in French adult nephrologists: a call for simplification and education. Clin Kidney J. 2022;15(6):1213–5.

    Article  PubMed  PubMed Central  Google Scholar 

  51. Spiech KM, Tripathy PR, Woodcock AM, Sheth NA, Collins KS, Kannegolla K, et al. Implementation of a renal precision medicine program: clinician attitudes and acceptance. Life. 2020;10(4):32.

    Article  PubMed  PubMed Central  Google Scholar 

  52. Dragojlovic N, Borle K, Kopac N, Ellis U, Birch P, Adam S, et al. The composition and capacity of the clinical genetics workforce in high-income countries: a sco** review. Genet Med. 2020;22(9):1437–49.

    Article  PubMed  Google Scholar 

  53. Walton NA, Christensen GB. Paving a pathway for large-scale utilization of genomics in precision medicine and population health. Front Sociol. 2023;8

  54. Umeukeje EM, Young BA. Genetics and ESKD Disparities in African Americans. Am J Kidney Dis. 2019;74(6):811–21.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  55. Lee SSJ. The ethics of consent in a shifting genomic ecosystem. Annu Rev Biomed Data Sci. 2021;4(1):145–64.

    Article  PubMed  PubMed Central  Google Scholar 

  56. Sabatello M, Milo RH. The ethics of genetic testing for kidney diseases. Nat Rev Nephrol. 2020;16(11):619–20.

    Article  PubMed  PubMed Central  Google Scholar 

  57. Clayton EW, Smith ME, Anderson KC, Chung WK, Connolly JJ, Fullerton SM, et al. Studying the impact of translational genomic research: lessons from eMERGE. Am J Hum Genet. 2023;110(7):1021–33.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  58. McGuire AL, Gabriel S, Tishkoff SA, Wonkam A, Chakravarti A, Furlong EEM, et al. The road ahead in genetics and genomics. Nat Rev Genet. 2020;21(10):581–96.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  59. Horton R, Lucassen A. Consent and autonomy in the genomics era. Curr Genet Med Rep. 2019;7(2):85–91.

    Article  PubMed  PubMed Central  Google Scholar 

  60. Seaver LH, Khushf G, King NMP, Matalon DR, Sanghavi K, Vatta M, et al. Points to consider to avoid unfair discrimination and the misuse of genetic information: a statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med. 2022;24(3):512–20.

    Article  CAS  PubMed  Google Scholar 

  61. Shoenbill K, Fost N, Tachinardi U, Mendonca EA. Genetic data and electronic health records: a discussion of ethical, logistical and technological considerations. J Am Med Inform Assoc. 2014;21(1):171–80.

    Article  PubMed  Google Scholar 

  62. The Americans with Disabilities Act [Internet]. Available from: https://www.ada.gov

  63. Health Insurance Portability and Accountability Act of 1996 Breadcrumb ASPE Reports Health Insurance Portability and Accountability Act of 1996 [Internet]. Available from: https://aspe.hhs.gov/reports/health-insurance-portability-accountability-act-1996

  64. Patient Protection and Affordable Care Act of 2010 [Internet]. Available from: https://housedocs.house.gov/energycommerce/ppacacon.pdf

  65. The Genetic Information Nondiscrimination Act of 2008 [Internet]. Available from: https://www.eeoc.gov/statutes/genetic-information-nondiscrimination-act-2008

  66. Freedman BI, Moxey-Mims MM, Alexander AA, Astor BC, Birdwell KA, Bowden DW, et al. APOL1 Long-term Kidney Transplantation Outcomes Network (APOLLO): Design and Rationale. Kidney Int Rep. 2020;5(3):278–88.

    Article  PubMed  Google Scholar 

  67. Doshi MD, Gordon EJ, Freedman BI, Glover C, Locke JE, Thomas CP. Integrating APOL1 kidney-risk variant testing in live kidney donor evaluation: an expert panel opinion. Transplantation. 2021;105(10):2132–4.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  68. McIntosh T, Mohan S, Sawinski D, Iltis A, DuBois JM. Variation of ApoL1 Testing practices for living kidney donors. Prog Transplant. 2020;30(1):22–8.

    Article  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tamar Schiff.

Ethics declarations

Conflict of Interest

Tamar Schiff declares no competing interests.

Human and Animal Rights and Informed Consent

None.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Schiff, T. Clinical Genetic Testing in Kidney Disease and Transplantation: Logistical, Ethical, Legal, and Social Considerations. Curr Transpl Rep 10, 159–166 (2023). https://doi.org/10.1007/s40472-023-00418-0

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s40472-023-00418-0

Keywords

Navigation