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Molecular map** of Asian soybean rust resistance in Chinese and Japanese soybean lines, **ao **g Huang, Himeshirazu, and Iyodaizu B

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Abstract

Asian soybean rust (ASR), caused by the fungus Phakopsora pachyrhizi, is one of the most serious soybean diseases in South America and other tropical and sub-tropical areas. The soybean lines, ‘** populations derived from crosses with an ASR susceptible variety, BRS184. In each population, resistance to ASR appeared to be primarily controlled by a single major gene. The resistance genes with largest effect from ** with DNA markers and disease reactions of seven candidates carrying Rpp1 to four Brazilian ASR isolates revealed a significant variation in their ASR resistance reaction, indicating that they share different resistance genes tightly linked to each other or different resistant alleles of a single Rpp1 gene. Therefore, these seven soybean lines could be clearly separated into at least two functional groups.

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References

  • Akamatsu H, Yamanaka N, Yamaoka Y, Soares RM, Morel W, Ivancovich AJG, Bogado AN, Kato M, Yorinori JT, Suenaga K (2013) Pathogenic diversity of soybean rust in Argentina, Brazil, and Paraguay. J Gen Plant Pathol 79:28–40. doi:10.1007/s10327-012-0421-7

    Article  Google Scholar 

  • Benitez ER, Yamaoka Y, Takahashi R, Takahashi K, Paiva WM, U SP, Dow MTH (2008) Evaluation of selected Japanese varieties for resistance to Phakopsora pachyrhizi. Breed Res 10 (Supplement 1):70

  • Brogin RL (2005) Mapeamento de genes de resistência à ferrugem e de QTLs envolvidos na resistência à septoriose em soja. Dissertation, Universidade de São Paulo

  • Chakraborty N, Curley J, Frederick R, Hyten D, Nelson R, Hartman G, Diers B (2009) Map** and confirmation of a new allele at Rpp1 from soybean PI 594538A conferring RB lesion-type resistance to soybean rust. Crop Sci 49:783–790. doi:10.2135/cropsci2008.06.0335

    Article  CAS  Google Scholar 

  • Garcia A, Calvo ES, Kiihl RAS, Harada A, Hiromoto DM, Vieira LGE (2008) Molecular map** of soybean rust (Phakopsora pachyrhizi) resistance genes: discovery of a novel locus and alleles. Theor Appl Genet 117:545–553. doi:10.1007/s00122-008-0798-z

    Article  CAS  PubMed  Google Scholar 

  • Garcia A, Calvo ES, Kiihl RAS, Souto ER (2011) Evidence of a susceptible allele inverting the dominance of rust resistance in soybean. Crop Sci 51:32–40. doi:10.2135/cropsci2010.01.0037

    Article  Google Scholar 

  • Goellner K, Loehrer M, Langenbach C, Conrath U, Koch E, Schaffrath U (2010) Phakopsora pachyrhizi, the causal agent of Asian soybean rust. Mol Plant Pathol 11:169–177. doi:10.1111/J.1364-3703.2009.00589.X

    Article  CAS  PubMed  Google Scholar 

  • Grant D, Nelson RT, Cannon SB, Shoemaker RC (2010) SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Res 38:D843–D846. doi:10.1093/nar/gkp798

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Hartwig EE, Bromfield KR (1983) Relationships among three genes conferring specific resistance to rust in soybeans. Crop Sci 23:237–239. doi:10.2135/cropsci1983.0011183X002300020012x

    Article  Google Scholar 

  • Hossain MM, Akamatsu H, Morishita M, Mori T, Yamaoka Y, Suenaga K, Soares RM, Bogado AN, Ivancovich AJG, Yamanaka N (2014) Molecular map** of Asian soybean rust resistance in soybean landraces PI 594767A, PI 587905 and PI 416764. Plant Pathol. doi:10.1111/ppa.12226

    Google Scholar 

  • Hyten DL, Hartman GL, Nelson RL, Frederick RD, Concibido VC, Narvel JM, Gregan PB (2007) Map location of the Rpp1 locus that confers resistance to soybean rust in soybean. Crop Sci 47:835–838. doi:10.2135/cropsci2006.07.0484

    Article  Google Scholar 

  • Hyten DL, Smith JR, Frederick RD, Tucker ML, Song Q, Cregan PB (2009) Bulked segregant analysis using the GoldenGate assay to locate the Rpp3 locus that confers resistance to soybean rust in soybean. Crop Sci 49:265–271. doi:10.2135/cropsci2008.08.0511

    Article  CAS  Google Scholar 

  • Jeong SC, Hayes AJ, Biyashev RM, Maroof MS (2001) Diversity and evolution of a non-TIR-NBS sequence family that clusters to a chromosomal “hotspot” for disease resistance genes in soybean. Theor Appl Genet 103:406–414. doi:10.1007/s001220100567

    Article  CAS  Google Scholar 

  • Kendrick MD, Harris DK, Ha BK, Hyten DL, Cregan PB, Frederick RD, Boerma HR, Pedley KF (2011) Identification of a second Asian soybean rust resistance gene in Hyuuga soybean. Phytopathology 101:535–543. doi:10.1094/PHYTO-09-10-0257

    Article  PubMed  Google Scholar 

  • Kim KS, Unfried JR, Hyten DL, Frederick RD, Hartman GL, Nelson RL, Song Q, Diers BW (2012) Molecular map** of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm. Theor Appl Genet 125:1339–1352. doi:10.1007/s00122-012-1932-5

    Article  CAS  PubMed  Google Scholar 

  • Lander E, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newberg LA (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 11:174–181

    Article  Google Scholar 

  • Laperuta LDC, Arias CAA, Ribeiro AS, Rachid BF, Pierozzi PHB, Toledo JFFD, Pípolo AE, Carneiro GEDS (2008) New genes conferring resistance to Asian soybean rust: allelic testing for the Rpp2 and Rpp4 loci. Pesqui Agropecu Bras 43:1741–1747

    Article  Google Scholar 

  • Lemos NG, Braccini AL, Abdelnoor RV, Oliveira MCN, Suenaga K, Yamanaka N (2011) Characterization of genes Rpp2, Rpp4, and Rpp5 for resistance to soybean rust. Euphytica 182:53–64. doi:10.1007/s10681-011-0465-3

    Article  CAS  Google Scholar 

  • Levy C (2005) Epidemiology and chemical control of soybean rust in southern Africa. Plant Dis 89:669–674. doi:10.1094/PD-89-0669

    Article  CAS  Google Scholar 

  • Li S, Smith JR, Ray JD, Frederick RD (2012) Identification of a new soybean rust resistance gene in PI 567102B. Theor Appl Genet 125:133–142. doi:10.1007/s00122-012-1821-y

    Article  CAS  PubMed  Google Scholar 

  • Miles MR, Frederick RD, Hartman GL (2006) Evaluation of soybean germplasm for resistance to Phakopsora pachyrhizi. Plant Health Prog. doi:10.1094/PHP-2006-0104-01-RS

    Google Scholar 

  • Monteros M, Missaoui A, Phillips D, Walker D, Boerma H (2007) Map** and confirmation of the ‘Hyuuga’ red-brown lesion resistance gene for Asian soybean rust. Crop Sci 47:829–836. doi:10.2135/cropsci06.07.0462

    Article  CAS  Google Scholar 

  • Oliveira ACB, Godoy CV, Martins MC (2005) Avaliação da tolerância de cultivares de soja à ferrugem asiática no Oeste da Bahia. Fitopatol Bras 30:658–662

    Article  Google Scholar 

  • Ray J, Morel W, Smith J, Frederik R, Miles M (2009) Genetics and map** of adult plant rust resistance in soybean PI 587886 and PI 587880A. Theor Appl Genet 119:271–280. doi:10.1007/s00122-009-1036-z

    Article  CAS  PubMed  Google Scholar 

  • Ray JD, Smith JR, Morel W, Bogado N, Walker DR (2011) Genetic resistance to soybean rust in PI 567099A in at or near the Rpp3 locus. J Crop Improv 25:219–231. doi:10.1080/15427528.2011.555833

    Article  Google Scholar 

  • Ribeiro AS, Moreira JUV, Pierozzi PHB, Rachid BF, De Toledo JFF, Arias CAA, Soares RM, Godoy CV (2007) Genetic control of Asian rust in soybean. Euphytica 15:15–25. doi:10.1007/s10681-007-9404-8

    Article  Google Scholar 

  • Schneider R, Sikora E, Padgett B, Sciumbato G (2008) Managing late-season soybean diseases and soybean rust: a southern perspective. In: Dorrance AE, Draper MA, Hershman DE (eds) Using of foliar fungicides to manage soybean rust. Ohio State University, Columbus, pp 72–75

    Google Scholar 

  • Silva DCG, Yamanaka N, Brogin RL, Arias CAA, Nepomuceno AL, Di Mauro AO, Pereira SS, Nogueira LM, Passianotto ALL, Abdelnoor RV (2008) Molecular map** of two loci that confer resistance to Asian rust in soybean. Theor Appl Genet 117:57–63. doi:10.1007/s00122-008-0752-0

    Article  CAS  PubMed  Google Scholar 

  • Song Q, Marek L, Shoemaker R, Lark K, Concibido V, Delannay X, Specht J, Cregan P et al (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109:122–128. doi:10.1007/s00122-004-1602-3

    Article  CAS  PubMed  Google Scholar 

  • Wang S, Basten CJ, Zeng ZB (2007) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm. Accessed 15 March 2013

  • Yamanaka N, Silva DCG, Passianotto ALL, Nogueira LM, Polizel AM, Pereira SS, Santos JVM, Brogin RL, Arias CAA, Hoffmann-Campo CB, Nepomuceno AL, Abdelnoor RV (2008) Identification of DNA markers and characterization of the genes for resistance against Asian soybean rust. In: Kudo H, Suenaga K, Soares RM, Toledo A (eds) JIRCAS Working Report No. 58: Facing the challenge of soybean rust in South America. JIRCAS, Tsukuba, pp 99–107

  • Yamanaka N, Yamaoka Y, Kato M, Lemos NG, Passianotto ALL, Santos JVM, Benitez ER, Abdelnoor RV, Soares RM, Suenaga K (2010) Development of classification criteria for resistance to soybean rust and differences in virulence among Japanese and Brazilian rust populations. Trop Plant Pathol 35:153–162

    Article  Google Scholar 

  • Yamanaka N, Lemos NG, Akamatsu H, Yamaoka Y, Silva DCG, Passianotto ALL, Abdelnoor RV, Soares RM, Suenaga K (2011) Soybean breeding materials useful for resistance to soybean rust in Brazil. JARQ 45:385–395

    Article  CAS  Google Scholar 

  • Yamanaka N, Akamatsu H, Yamaoka (2013a) Laboratory manual for studies on soybean rust resistance. JIRCAS website. http://www.jircas.affrc.go.jp/english/manual/soybean_rust/soybean_rust.html. Accessed 1 Dec 2013

  • Yamanaka N, Lemos NG, Uno M, Akamatsu H, Yamaoka Y, Abdelnoor RV, Braccini AL, Suenaga K (2013b) Resistance to Asian soybean rust in soybean lines with the pyramided three Rpp genes. Crop Breed Appl Biotechnol 13:75–82

    Article  Google Scholar 

  • Yamaoka Y, Yamanaka N, Akamatsu H, Suenaga K (2014) Pathogenic races of soybean rust Phakopsora pachyrhizi collected in Tsukuba and vicinity in Ibaraki, Japan. J Gen Plant Pathol 80:184–188. doi:10.1007/s10327-014-0507-5

    Article  Google Scholar 

  • Yorinori JT (2008) Soybean germplasms with resistance and tolerance to Asian rust and screening methods. In: Kudo H, Suenaga K, Soares RM, Toledo A (eds) JIRCAS Working Report No. 58: Facing the challenge of soybean rust in South America. JIRCAS, Tsukuba, pp 70–87

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Acknowledgments

We thank M. Morishita, T. Mori, and M. Hasegawa (JIRCAS) for their technical assistance, advice, and encouragement. We are grateful to the Brazilian Agricultural Research Corporation (Embrapa) in Brazil, the Jilin Academy of Agricultural Sciences (JAAS) in China, the National Institute of Agrobiological Science (NIAS) and the National Institute of Crop Science (NICS) in Japan for providing seeds of soybean varieties. This study was financially supported and conducted by the JIRCAS research Project “Development of Breeding Technologies toward Improved Production and Stable Supply of Upland Crops.” The author, M. M. H. was financially supported by JIRCAS Visiting Research Fellowship Program.

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Authors and Affiliations

  1. Japan International Research Center for Agricultural Sciences (JIRCAS), 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan

    Naoki Yamanaka & Md. Motaher Hossain

  2. Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur, 1706, Bangladesh

    Md. Motaher Hossain

  3. Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8572, Japan

    Yuichi Yamaoka

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  1. Naoki Yamanaka
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  2. Md. Motaher Hossain
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  3. Yuichi Yamaoka
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Correspondence to Naoki Yamanaka.

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  • DOI: https://doi.org/10.1007/s10681-015-1377-4

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