Abstract
The complete complementary DNA sequences of genes presumably coding for opine dehydrogenases from Arabella iricolor (sandworm), Haliotis discus hannai (abalone), and Patinopecten yessoensis (scallop) were determined, and partial cDNA sequences were derived for Meretrix lusoria (Japanese hard clam) and Spisula sachalinensis (Sakhalin surf clam). The primers ODH-9F and ODH-11R proved useful for amplifying the sequences for opine dehydrogenases from the 4 mollusk species investigated in this study. The sequence of the sandworm was obtained using primers constructed from the amino acid sequence of tauropine dehydrogenase, the main opine dehydrogenase in A. iricolor. The complete cDNA sequence of A. iricolor, H. discus hannai, and P. yessoensis encode 397, 400, and 405 amino acids, respectively. All sequences were aligned and compared with published databank sequences of Loligo opalescens, Loligo vulgaris (squid), Sepia officinalis (cuttlefish), and Pecten maximus (scallop). As expected, a high level of homology was observed for the cDNA from closely related species, such as for cephalopods or scallops, whereas cDNA from the other species showed lower-level homologies. A similar trend was observed when the deduced amino acid sequences were compared. Furthermore, alignment of these sequences revealed some structural motifs that are possibly related to the binding sites of the substrates. The phylogenetic trees derived from the nucleotide and amino acid sequences were consistent with the classification of species resulting from classical taxonomic analyses.
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References
K.L. Britton Y. Asano D.W. Rice (1998) ArticleTitleCrystal structure and active site location of N-(1-D-carboxylethyl)-L-norvaline dehydrogenase Nat Struct Boil 5 593–601
P. Chomczynski N. Sacchi (1987) ArticleTitleSingle-step method of RNA isolation by acid guanidinium thiocyanate–phenol–chloroform extraction Anal Biochem 162 156–159 Occurrence Handle10.1006/abio.1987.9999 Occurrence Handle1:CAS:528:DyaL2s**tFSns7Y%3D Occurrence Handle2440339
T. Dairi Y. Asano (1995) ArticleTitleCloning, nucleotide sequencing, and expression of an opine dehydrogenase gene from Arthrobacter sp. strain 1C Appl Environ Microbiol 61 3169–3171 Occurrence Handle1:CAS:528:DyaK2MXnt1ahs70%3D Occurrence Handle7487048
J. Felsenstein (1985) ArticleTitleConfidence-limits on phylogenies—an approach using the bootstrap Evolution 39 783–791
G. Gäde E. Zebe (1973) ArticleTitleÜber den Anaerobiosestoffwechsel von Molluskenmuskeln J Comp Physiol 85 291–301
M.K. Grieshaber I. Hardewig U. Kreutzer H.O. Pörtner (1994) ArticleTitlePhysiological and metabolic responses to hypoxia in invertebrates Rev Physiol Biochem Pharmacol 125 43–147 Occurrence Handle1:CAS:528:DyaK2M**vFWqsL8%3D Occurrence Handle7984874 Occurrence Handle10.1007/BFb0030909
M. Hattori Y. Sakaki (1986) ArticleTitleDideoxy sequencing method using denatured plasmid templates Anal Biochem 152 232–238 Occurrence Handle1:CAS:528:DyaL28XosVylsg%3D%3D Occurrence Handle3516005
Jukes, T.H., Cantor, C.R. (1969) “Evolution of protein molecules” In: Manro, H.N. (ed.). New York, N.Y: Mammalian Protein Metabolism, Academic Press, pp 21–123
N. Kanno K. Kamimura E. Nagahisa M. Sato Y. Sato (1996a) ArticleTitleApplication of isoelectric focusing in thin-layer polyacrylamide gels to the study of opine dehydrogenases in marine invertebrates Fisheries Sci 62 122–125 Occurrence Handle1:CAS:528:DyaK28XhsFOlt7w%3D
N. Kanno M. Sato E. Nagahisa Y. Sato (1996b) ArticleTitleTauropine dehydrogenase from the sandworm Arabella iricolor (Polychaeta: Errantia): purification and characterization Comp Biochem Physiol 114B 409–416 Occurrence Handle1:CAS:528:DyaK28XlsV2ju7o%3D
M. Kimura (1969) ArticleTitleThe rate of molecular evolution considered from the standpoint of population genetics Proc Natl Acad Sci U S A 63 1181–1188 Occurrence Handle1:CAS:528:DyaE3cXjvFSjsQ%3D%3D Occurrence Handle5260917
U. Kreutzer B.R Siegmund M.K. Grieshaber (1985) ArticleTitleRole of coupled substrates and alternative end products durinn hypoxia tolerance in marine invertebrates Mol Physiol 8 371–392 Occurrence Handle1:CAS:528:DyaL28**tVCitro%3D
U. Kreutzer B.R. Siegmund M.K. Grieshaber (1989) ArticleTitleParameters controlling opine formation during muscular activity and environmental hypoxia J Comp Physiol B 159 617–628
G.P. Manchenko D.J. McGoldrick D. Hedgecock (1998) ArticleTitleGenetic basis of opine dehydrogenase activities in the Pacific oyster, Crassostrea gigas Comp Biochem Physiol 121B 251–255 Occurrence Handle1:CAS:528:DyaK1MXjtFWnsQ%3D%3D
N. Saito M. Nei (1987) ArticleTitleThe neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406–425 Occurrence Handle1:STN:280:BieC1cbgtVY%3D Occurrence Handle3447015
Salvini-Plawen, L.V., Steiner, G. (1996) “Synapomorphies and plesiomorphies in higher classification of Mollusca” Origin and Evolutionary Radiation of the Mollusca, Taylor, J.D. (ed.), New York, N.Y.: Oxford University Press, pp 29–51
M. Sato M. Takeuchi N. Kanno E. Nagahisa Y. Sato (1993) ArticleTitleDistribution of opine dehydrogenase and lactate dehydrogenase activity in marine animals Comp Biochem Physiol 106B 955–960 Occurrence Handle1:CAS:528:DyaK2cXhtVanuro%3D
J. Schell M. Montagu Particlevan M. Beuckeleer Particlede M. Block Particlede A. Depicker M. Wilde Particlede C. Genetello J.P. Hernalsteens M. Holsters J. Serinck B. Silva F. Vliet Particlevan R. Villarroel (1979) ArticleTitleInteractions and DNA transfer between Agrobacterium tumefaciens, the Ti-plasmid and the plant host Proc R Soc Land B Biol Sci 204 251–266 Occurrence Handle10.1098/rspb.1979.0026
J.D. Thompson D.G. Higgins T.J. Gibson (1994) ArticleTitleCLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673–4680 Occurrence Handle1:CAS:528:DyaK2M**tlSgu74%3D Occurrence Handle7984417
R.K. Wierenga M.C.H. De Maeyer W.G.J. Hol (1985) ArticleTitleInteractions of pyrophosphate moieties with alpha-helices in dinucleotide binding proteins Biochemistry 24 1346–1357
Acknowledgments
We thank the Deutsche Forschungsgemeinschaft for providing ongoing and substantial help (M.K.G. and F.J. received a stipend from the Graduiertenkolleg “Molekulare Physiologie: Stoffund Energietransformationen”).
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Kimura, T., Nakano, T., Yamaguchi, T. et al. Complementary DNA Cloning and Molecular Evolution of Opine Dehydrogenases in Some Marine Invertebrates. Mar Biotechnol 6, 493–502 (2004). https://doi.org/10.1007/s10126-004-2700-6
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DOI: https://doi.org/10.1007/s10126-004-2700-6