Log in

Overexpression of endogenous retroviruses in children with celiac disease

  • Original Article
  • Published:
European Journal of Pediatrics Aims and scope Submit manuscript

Abstract

Human endogenous retroviruses (HERVs) represent 8% of our genome. Although no longer infectious, they can regulate transcription of adjacent cellular genes, produce retroviral RNAs, and encode viral proteins that can modulate both innate and adaptive immune responses. Based on this, HERVs have been studied and proposed as contributing factors in various autoimmune disorders. Celiac disease (CD) is considered an autoimmune disease, but HERV expression has not been studied in celiac patients. The aim of this study is to assess the transcription levels of pol genes of HERV-H, -K, and -W and of their TRIM28 repressor in WBCs from celiac children and age-matched control subjects. A PCR real-time TaqMan amplification assay was used to evaluate HERV and TRIM28 transcripts with normalization of the results to glyceraldehyde-3-phosphate dehydrogenase. The RNA levels of pol genes of the three HERV families were significantly higher in WBCs from 38 celiac patients than from 51 control subjects. TRIM28 transcription was comparable between the two study populations.

Conclusion: Present results show, for the first time, that pol genes of HERV-H, -K, and -W are overexpressed in patients with CD. Given their proinflammatory and autoimmune properties, this suggests that HERVs may contribute to the development of CD in susceptible individuals.

What is Known:

• Based on this, HERVs have been studied and proposed as contributing factors in various autoimmune disorders.

What is New:

• Present results show, for the first time, that pol genes of HERV-H, -K, and -W are overexpressed in patients with CD.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price includes VAT (Canada)

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

Data availability

N/A.

Code availability

N/A.

Abbreviations

CD:

Celiac disease

HERVs :

Human endogenous retroviruses

GAPDH:

Glyceraldehyde-3-phosphate dehydrogenase

KRAB-ZNFs:

Krüppel-associated box domain-zinc finger proteins

MS:

Multiple sclerosis

PRRs:

Pattern recognition receptors

SUMO:

Small ubiquitin-like modifier

SNPs:

Single-nucleotide polymorphisms

T1D:

Type 1 diabetes

WBCs:

White blood cells

References

  1. Sollid LM, Lie BA (2005) Celiac disease genetics: current concepts and practical applications. Clin Gastroenterol Hepatol 3:843–851

    Article  CAS  Google Scholar 

  2. Abadie V, Sollid LM, Barreiro LB, Jabri B (2011) Integration of genetic and immunological insights into a model of celiac disease pathogenesis. Annu Rev Immunol 29:493–525

    Article  CAS  Google Scholar 

  3. Johnson WE (2019) Origins and evolutionary consequences of ancient endogenous retroviruses. Nat Rev Microbiol 17:355–370

    Article  CAS  Google Scholar 

  4. Rolland A, Jouvin-Marche E, Viret C, Faure M, Perron H, Marche PN (2006) The envelope protein of a human endogenous retrovirus-W family activates innate immunity through CD14/TLR4 and promotes Th1-like responses. J Immunol 176:7636–7644

    Article  CAS  Google Scholar 

  5. Perron H, Dougier-Reynaud HL, Lomparski C, Popa I, Firouzi R, Bertrand JB, Marusic S, Portoukalian J, Jouvin-Marche E, Villiers CL, Touraine JL, Marche PN (2013) Human endogenous retrovirus protein activates innate immunity and promotes experimental allergic encephalomyelitis in mice. PLoS One 8:e80128

    Article  Google Scholar 

  6. Chuong EB, Elde NC, Feschotte C (2016) Regulatory evolution of innate immunity through co-option of endogenous retroviruses. Science. 351:1083–1087

    Article  CAS  Google Scholar 

  7. Lokossou AG, Toudic C, Nguyen PT, Elisseeff X, Vargas A, Rassart É, Lafond J, Leduc L, Bourgault S, Gilbert C, Scorza T, Tolosa J, Barbeau B (2020) Endogenous retrovirus-encoded Syncytin-2 contributes to exosome-mediated immunosuppression of T cells. Biol Reprod 102:185–198

    PubMed  Google Scholar 

  8. Yu P (2016) The potential role of retroviruses in autoimmunity. Immunol Rev 269:85–99

    Article  CAS  Google Scholar 

  9. Grandi N, Tramontano E (2018) HERV envelope proteins: physiological role and pathogenic potential in cancer and autoimmunity. Front Microbiol 9:462

    Article  Google Scholar 

  10. Rowe HM, Jakobsson J, Mesnard D et al (2012) KAP1 controls endogenous retroviruses in embryonic stem cells. Nature. 463:237–240

    Article  Google Scholar 

  11. Turelli P, Castro-Diaz N, Marzetta F, Kapopoulou A, Raclot C, Duc J, Tieng V, Quenneville S, Trono D (2014) Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements. Genome Res 24:1260–1270

    Article  CAS  Google Scholar 

  12. Husby S, Koletzko S, Korponay-Szabó IR, Mearin ML, Phillips A, Shamir R, Troncone R, Giersiepen K, Branski D, Catassi C, Lelgeman M, Mäki M, Ribes-Koninckx C, Ventura A, Zimmer KP, ESPGHAN Working Group on Coeliac Disease Diagnosis, ESPGHAN Gastroenterology Committee, European Society for Pediatric Gastroenterology, Hepatology, and Nutrition (2012) Hepatology, and nutrition guidelines for the diagnosis of coeliac disease. J Pediatr Gastroenterol Nutr 54:136–160

    Article  CAS  Google Scholar 

  13. Bergallo M, Galliano I, Daprà V, Pirra A, Montanari P, Pavan M, Calvi C, Bertino E, Coscia A, Tovo PA (2019) Transcriptional activity of human endogenous retroviruses in response to prenatal exposure of maternal cigarette smoking. Am J Perinatol 36:1060–1065

    Article  Google Scholar 

  14. Tovo PA, Garazzino S, Daprà V, Alliaudi C, Silvestro E, Calvi C, Montanari P, Galliano I, Bergallo M (2020) Chronic HCV infection is associated with overexpression of human endogenous retroviruses that persists after drug-induced viral clearance. Int J Mol Sci 21:3980

    Article  CAS  Google Scholar 

  15. Tovo PA, Rabbone I, Tinti D et al (2020) Enhanced expression of human endogenous retroviruses in new-onset type 1 diabetes: potential pathogenetic and therapeutic implications. Autoimmunity. 5:283–288

    Article  Google Scholar 

  16. Marsh MN (1990) Grains of truth: evolutionary changes in small intestinal mucosa in response to environmental antigen challenge. Gut. 31:111–114

    Article  CAS  Google Scholar 

  17. Oberhuber G, Granditsch G, Vogelsang H (1999) The histopathology of coeliac disease: time for a standardized report scheme for pathologists. Eur J Gastroenterol Hepatol 11:1185–1194

    Article  CAS  Google Scholar 

  18. Withoff S, Li Y, Jonkers I, Wijmenga C (2016) Understanding celiac disease by genomics. Trends Genet 32:295–308

    Article  CAS  Google Scholar 

  19. Lebwohl B, Sanders DS, Green PHR (2018) Coeliac disease. Lancet. 391:70–81

    Article  Google Scholar 

  20. Ruprecht K, Obojes K, Wengel V, Gronen F, Kim KS, Perron H, Schneider-Schaulies J, Rieckmann P (2006) Regulation of human endogenous retrovirus W protein expression by herpes simplex virus type 1: implications for multiple sclerosis. J Neuro-Oncol 12:65–71

    CAS  Google Scholar 

  21. van der Kuyl AC (2012) HIV infection and HERV expression: a review. Retrovirology. 9:6

    Article  Google Scholar 

  22. Leung A, Trac C, Kato H, Costello KR, Chen Z, Natarajan R, Schones DE (2018) LTRs activated by Epstein-Barr virus-induced transformation of B cells alter the transcriptome. Genome Res 28:1791–1798

    Article  CAS  Google Scholar 

  23. Schmidt N, Domingues P, Golebiowski F, Patzina C, Tatham MH, Hay RT, Hale BG (2019) An influenza virus-triggered SUMO switch orchestrates co-opted endogenous retroviruses to stimulate host antiviral immunity. Proc Natl Acad Sci U S A 116:17399–17408

    Article  CAS  Google Scholar 

  24. Manghera M, Ferguson-Parry J, Lin R, Douville RN (2016) NF-κB and IRF1 induce endogenous retrovirus K expression via interferon-stimulated response elements in its 5’ long terminal repeat. J Virol 90:9338–9349

    Article  CAS  Google Scholar 

  25. Yu XB, Uhde M, Green PH, Alaedini A (2018) Autoantibodies in the extraintestinal manifestations of celiac disease. Nutrients 10:1123

    Article  Google Scholar 

  26. Setty M, Discepolo V, Abadie V et al (2015) Distinct and synergistic contributions of epithelial stress and adaptive immunity to functions of intraepithelial killer cells and active celiac disease. Gastroenterology 149:681–691.e610

    Article  CAS  Google Scholar 

  27. Perl A, Nagy G, Koncz A, Gergely P, Fernandez D, Doherty E, Telarico T, Bonilla E, Phillips PE (2008) Molecular mimicry and immunomodulation by the HRES-1 endogenous retrovirus in SLE. Autoimmunity. 41:287–297

    Article  CAS  Google Scholar 

  28. Nelson PN, Roden D, Nevill A, Freimanis GL, Trela M, Ejtehadi HD, Bowman S, Axford J, Veitch AM, Tugnet N, Rylance PB (2014) Rheumatoid arthritis is associated with IgG antibodies to human endogenous retrovirus gag matrix: a potential pathogenic mechanism of disease? J Rheumatol 41:1952–1960

    Article  CAS  Google Scholar 

  29. Levet S, Medina J, Joanou J, Demolder A, Queruel N, Réant K, Normand M, Seffals M, Dimier J, Germi R, Piofczyk T, Portoukalian J, Touraine JL, Perron H (2017) An ancestral retroviral protein identified as a therapeutic target in type-1 diabetes. JCI Insights 2:e94387

    Article  Google Scholar 

  30. Mameli G, Erre GL, Caggiu E, Mura S, Cossu D, Bo M, Cadoni ML, Piras A, Mundula N, Colombo E, Buscetta G, Passiu G, Sechi LA (2017) Identification of a HERV-K env surface peptide highly recognized in rheumatoid arthritis (RA) patients: a cross-sectional case-control study. Clin Exp Immunol 189:127–131

    Article  CAS  Google Scholar 

  31. Kahaly GJ, Frommer L, Schuppan D (2018) Celiac disease and endocrine autoimmunity-the genetic link. Autoimmun Rev 17:1169–1175

    Article  CAS  Google Scholar 

  32. Hagopian W, Lee HS, Liu E, Rewers M, She JX, Ziegler AG, Lernmark Å, Toppari J, Rich SS, Krischer JP, Erlich H, Akolkar B, Agardh D, the TEDDY Study Group (2017) Co-occurrence of type 1 diabetes and celiac disease autoimmunity. Pediatrics. 140:e20171305

    Article  Google Scholar 

  33. Saito T, Miyagawa K, Chen SY, Tamosiuniene R, Wang L, Sharpe O, Samayoa E, Harada D, Moonen JRAJ, Cao A, Chen PI, Hennigs JK, Gu M, Li CG, Leib RD, Li D, Adams CM, del Rosario PA, Bill M, Haddad F, Montoya JG, Robinson WH, Fantl WJ, Nolan GP, Zamanian RT, Nicolls MR, Chiu CY, Ariza ME, Rabinovitch M (2017) Upregulation of human endogenous retrovirus-K is linked to immunity and inflammation in pulmonary arterial hypertension. Circulation. 136:1920–1935

    Article  CAS  Google Scholar 

  34. Nilsen EM, Lundin KE, Krajci P, Scott H, Sollid LM, Brandtzaeg P (1995) Gluten specific, HLA-DQ restricted T cells from coeliac mucosa produce cytokines with Th1 or Th0 profile dominated by interferon gamma. Gut. 37:766–776

    Article  CAS  Google Scholar 

  35. Choung RS, Ditah IC, Nadeau AM, Rubio-Tapia A, Marietta EV, Brantner TL, Camilleri MJ, Rajkumar VS, Landgren O, Everhart JE, Murray JA (2015) Trends and racial/ethnic disparities in gluten-sensitive problems in 81 the United States: findings from the National Health and Nutrition Examination Surveys from 1988 to 2012. Am J Gastroenterol 110:455–461

    Article  Google Scholar 

  36. Gatti S, Lionetti E, Balanzoni L, Verma AK, Galeazzi T, Gesuita R, Scattolo N, Cinquetti M, Fasano A, Catassi C, Annibali R, del Baldo G, Franceschini E, Palpacelli A, Monachesi C, Catassi GN, Trevisan MT, Anton G, Colombari AM (2020) Increased prevalence of celiac disease in school-age children in Italy. Clin Gastroenterol Hepatol 18:596–603

    Article  Google Scholar 

  37. Pathak R, Feil R (2018) Environmental effects on chromatin repression at imprinted genes and endogenous retroviruses. Curr Opin Chem Biol 45:139–147

    Article  CAS  Google Scholar 

  38. Azébi S, Batsché E, Michel F, Kornobis E, Muchardt C (2019) Expression of endogenous retroviruses reflects increased usage of atypical enhancers in T cells. EMBO J. 38pii:e101107.

Download references

Acknowledgements

We thank Dr. Hervé Perron (Geneuro-Innovation & University of Lyon, France) for his critical revision of the manuscript and helpful comments.

Author information

Authors and Affiliations

Authors

Contributions

PA and MB developed the theory, contributed to the design and implementation of the research, and write the manuscript. IG and VD contributed with the statistical analysis. AO, MP, CR, AP, and GC contributed to the design and implementation of the research and revised the manuscript. FC revised the manuscript. CC performed the experiment. All authors approved the final manuscript as submitted.

Corresponding author

Correspondence to Massimiliano Bergallo.

Ethics declarations

Ethics approval

All procedures performed were in accordance with the ethical standards of the institutional research committee and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. Informed consent was obtained from all individual participants included in the study.

Consent to participate

N/A.

Conflict of interest

The authors declare no competing interests.

Additional information

Communicated by Peter de Winter

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Tovo, PA., Opramolla, A., Pizzol, A. et al. Overexpression of endogenous retroviruses in children with celiac disease. Eur J Pediatr 180, 2429–2434 (2021). https://doi.org/10.1007/s00431-021-04050-x

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00431-021-04050-x

Keywords

Navigation