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Fine-map** and candidate gene analysis of the Mcgy1 locus responsible for gynoecy in bitter gourd (Momordica spp.)

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Abstract

Key message

The Mcgy1 locus responsible for gynoecy was fine-mapped into a 296.94-kb region, in which four single-nucleotide variations and six genes adjacent to them might be associate with sex differentiation in bitter gourd.

Abstract

Gynoecy plays an important role in high-efficiency hybrid seed production, and gynoecious plants are excellent materials for dissecting sex differentiation in Cucurbitaceae crop species, including bitter gourd. However, the gene responsible for gynoecy in bitter gourd is unknown. Here, we first identified a gynoecy locus designated Mcgy1 using the F2 population (n = 291) crossed from the gynoecious line S156G and the monoecious line K8-201 via bulked segregant analysis with whole-genome resequencing (BSA-seq) and molecular marker linkage analysis. Then, a large S156G × K8-201 F2 population (n = 5,656) was used for fine-map** to delimit the Mcgy1 locus into a 296.94-kb physical region on pseudochromosome MC01, where included 33 annotated genes different from any homologous gynoecy genes previously reported in Cucurbitaceae species. Within this region, four underlying single-nucleotide variations (SNVs) that might cause gynoecy were identified by multiple genomic sequence variation analysis, and their six neighbouring genes were considered as potential candidate genes for Mcgy1. Of these, only MC01g1681 showed a significant differential expression at two-leaf developmental stage between S156G and its monoecious near-isogenic line S156 based on RNA sequencing (RNA-seq) and qRT-PCR analyses. In addition, transcriptome analysis revealed 21 key differentially expressed genes (DEGs) and possible regulatory pathways of the formation of gynoecy in bitter gourd. Our findings provide a new clue for researching on gynoecious plants in Cucurbitaceae species and a theoretical basis for breeding gynoecious bitter gourd lines by the use of molecular markers-assisted selection.

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Data availability

The data that support the findings of the current study are available from the corresponding author upon reasonable request. Raw data of genome and transcriptome generated in this study have been deposited in National Genomic Data Center (NGDC) of China National Center for Bioinformation (CNCB) under accession number PRJCA011401.

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Funding

This work was supported by the Key Project of Basic and Applied Research for University in Guangdong Province (2018KZDXM016), the Science and Technology Planning Project of Guangdong Province (2018B020202007), the Guangzhou Science and Technology Plan Projects (202002020086, 202102020800, and 202206010170), and the Science and Technology Plan Projects of Guangdong Province (2019A050520002).

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KH and JWC conceived and designed the research. JZ and JJC performed most of the experiments and wrote the manuscript. JL and CFZ performed statistical analysis. FH and JCD provided helpful discussions. All authors read and approved the final manuscript.

Corresponding authors

Correspondence to Jiaowen Cheng or Kailin Hu.

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The authors declare that they have no conflicts of interest.

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The authors declare that this study complies with the current laws of China.

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Communicated by Yiqun Weng.

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Zhong, J., Cui, J., Liu, J. et al. Fine-map** and candidate gene analysis of the Mcgy1 locus responsible for gynoecy in bitter gourd (Momordica spp.). Theor Appl Genet 136, 81 (2023). https://doi.org/10.1007/s00122-023-04314-0

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  • DOI: https://doi.org/10.1007/s00122-023-04314-0

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