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From genomics to proteomics

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Abstract

Proteomics is a modern, rapidly develo** branch of biology aimed at the integral study of genome expression as the diversity of proteins. Proteomics is based on a variety of methods allowing one to isolate, detect, identify, and to analyze quantitatively thousands of proteins comprising the cellular proteome. Up to date, high-resolution two-dimensional electrophoresis is the key proteomic technology; it allows one to analyze simultaneously the protein composition of cells and tissues and to reveal quantitative and qualitative changes in the synthesis of proteins modulating multiple cell functions. The present status of proteomic technologies, i.e., of 2D electrophoresis, with accompanying methods of identification of proteins at the maps obtained, as well as a brief description of organization of human mouse 2D database suggested for global analysis of genome expression in normal and pathological conditions (http:/biobase.dk/cgi-bin/celis) are discussed.

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References

  1. Wilkins, M.R., Sanchez, J.C., Gooley, A.A.,et al., Biotechnol. Genet. Eng. Rev., 1996, vol. 13, pp. 19–50.

    Google Scholar 

  2. Anderson, L. and Seilhamer, J.,Electrophoresis, 1997, vol. 18, pp. 533–537.

    Article  PubMed  CAS  Google Scholar 

  3. Lottcpeich, F.,Angew. Chem. Int. Ed. Engl., 1999, vol. 38, pp. 2476–2492.

    Article  Google Scholar 

  4. Williams, K.L.,Electrophoresis, 1999, vol. 20, pp. 678–688.

    Article  PubMed  CAS  Google Scholar 

  5. Shishkin, S.S.,Vestnik AMS SSSR, 1985, no. 1, pp. 78–84.

    Google Scholar 

  6. Shishkin, S.S.,Dvadtsatyi vek, biologya. Izbrannye glavy sovremennoi biologii (The Twentieth Century, Biology, Selected Chapters of Modern Biology), Moscow: VINITI, 1994, pp. 39–50

    Google Scholar 

  7. Celis, J.E. and Bravo, R.,Two-Dimensional Gel Electrophoresis of Proteins: Methods and Applications. New York: Academic Press, 1984.

    Google Scholar 

  8. Wilkins, M.R., Williams, K.L., Appel, R.D., and Hochstrasser, D.F.,Proteomic Research: New Frontiers in Functional Genomics (Principles and Practice), New York: Springer Verlag, 1997.

    Google Scholar 

  9. Celis, J.E. and Olsen, E.,Electrophoresis, 1994, vol. 15, pp. 309–344.

    Article  PubMed  CAS  Google Scholar 

  10. Celis, J.E., Ostergaard, M., Jensen, N.A.,et al., FEBS Lett., 1998, vol. 430, pp. 64–72.

    Article  PubMed  CAS  Google Scholar 

  11. Jungblut, P.R., Zimny-Arndt, U., Zeindl-Eberhart, E.,et al., Electrophoresis, 1999, vol. 20, pp. 2100–2110.

    Article  PubMed  CAS  Google Scholar 

  12. Lopez, M.F.,Am. Clin. Lab., 1998, vol. 17, pp. 16–18.

    PubMed  CAS  Google Scholar 

  13. O'Farrell, P.H.,J. Biol. Chem., 1975, vol. 250, pp. 4007–4021.

    PubMed  Google Scholar 

  14. Klose, J.,Humangenetik, 1975, vol. 26, pp. 231–243.

    PubMed  CAS  Google Scholar 

  15. Celis, J.E., Ratz, G., Basse, B.,et al., Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, pp. 375–386.

    Google Scholar 

  16. Aebersold, R.H., Teplow, D.B., Hood, L.E., and Kent, S.B.,J. Biol. Chem., 1986, vol. 261, pp. 4229–4238.

    PubMed  CAS  Google Scholar 

  17. Matsudaira, P.,J. Biol. Chem. 1987, vol. 262, pp. 10035–10038.

    PubMed  CAS  Google Scholar 

  18. Bauw, G., Rasmussen, H.H., van den Bulcke, M.,et al., Electrophoresis, 1990, vol. 11, pp. 528–536.

    Article  PubMed  CAS  Google Scholar 

  19. Mann, M. and Wilm, M.,Anal. Chem., 1994, vol. 66, pp. 4390–4399.

    Article  PubMed  CAS  Google Scholar 

  20. Yates, J.R., Eng, J.K., McCormack, A.L., and Schieltz, D.,Anal. Chem., 1995, vol. 67, pp. 1426–1436.

    Article  PubMed  CAS  Google Scholar 

  21. Shevchenko, A., Wilm, M., and Mann, M.,J. Protein Chem., 1997, vol. 16, pp. 481–490.

    Article  PubMed  CAS  Google Scholar 

  22. Celis, J.E., Rasmussen, H.H., Gromov, P.,et al., Electrophoresis, 1995, vol. 16, pp. 2177–2240.

    Article  PubMed  CAS  Google Scholar 

  23. Goffeau, A., Barrell, B.G., Bussey, H.,et al., Science, 1996, vol. 274, pp. 563–567.

    Google Scholar 

  24. Schuler, G. D., Boguski, M. S., Stewart, E.A.,et al., Science, 1996, vol. 274, pp. 540–546.

    Article  Google Scholar 

  25. Celis, J.E., Madsen, P., Rasmussen, H.H.,et al., Electrophoresis, 1991, vol. 12, pp. 802–872.

    Article  PubMed  CAS  Google Scholar 

  26. Duncan, R. and McConkey, E.H.,Clin. Chem., 1982, vol. 28, pp. 749–755.

    PubMed  CAS  Google Scholar 

  27. Burggraf, D. and Lottspeich, F.,Electrophoresis, 1995, vol. 16, pp. 831–840.

    Article  PubMed  CAS  Google Scholar 

  28. O'Farrell P.Z., Goodman, H.M. and O'Farrell, P.H.,Cell, 1977, vol. 12, pp. 1133–1141.

    Article  PubMed  Google Scholar 

  29. Bjellqvist, B., Ek, K., Righetti, P.G.,et al., J. Biochem. Biophys. Methods, 1982, vol. 6, pp. 317–339.

    Article  PubMed  CAS  Google Scholar 

  30. Gorg, A., Postel, W., Domscheit, A., and Gunther, S.,Electrophoresis, 1988, vol. 9, pp. 681–692.

    Article  PubMed  CAS  Google Scholar 

  31. Righetti, P.G. and Bossi, A.,J. Chromatogr. B., Biomed. Sci. Appl., 1997, vol. 699, pp. 77–89.

    Article  CAS  Google Scholar 

  32. Gorg, A., Boguth, G., Obermaier, C., and Weiss, W.,Electrophoresis, 1998, vol. 19, pp. 1516–1519.

    Article  PubMed  CAS  Google Scholar 

  33. Anderson, N.L., and Anderson, N.G.,Electrophoresis, 1998, vol. 19, pp. 1853–1861.

    Article  PubMed  CAS  Google Scholar 

  34. Klose, J. and Kobalz, U.,Electrophoresis, 1995, vol. 16, pp. 1034–1059.

    Article  PubMed  CAS  Google Scholar 

  35. Walsh, B.J., Molloy, M.P. and Williams, K.L.,Electrophoresis, 1998, vol. 19, pp. 1883–1890.

    Article  PubMed  CAS  Google Scholar 

  36. Tang, W., Harrata, A.K., and Lee, C.S.,Anal. Chem. 1997, vol. 69, pp. 3177–3182.

    Article  PubMed  CAS  Google Scholar 

  37. Rabilloud, T., Adessi, C., Giraudel, A., and Lunardi, J.,Electrophoresis, 1997, vol. 18, pp. 307–316.

    Article  PubMed  CAS  Google Scholar 

  38. Chevallet, M., Santoni, V., Poinas, A.,et al., Electrophoresis, 1998, vol. 19, pp. 1901–1909.

    Article  PubMed  CAS  Google Scholar 

  39. Zakharov, S.F., Gromov, P.S., and Shishkin, S.S.,Vopr. Med. Khimii, 1988, vol. 34, pp. 139–142.

    PubMed  CAS  Google Scholar 

  40. Steinberg, T.H., Jones, L.J., Haughland, R.P., and Singer, V.L.,Anal. Biochem., 1996, vol. 239, pp. 223–237.

    Article  Google Scholar 

  41. Rasmussen, H.H., van Damme, J., Puype, M.,et al., Electrophoresis, 1991, vol. 12, pp. 873–882.

    Article  PubMed  CAS  Google Scholar 

  42. Vandekerckhove, J. and Rasmussen, H.H.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, vol. 4, pp. 505–514.

    Google Scholar 

  43. Yates, J.R.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, vol. 4, pp. 529–539.

    Google Scholar 

  44. Wilkins, M.R., Gasteiger, E., Gooley, A.A.,et al., J. Mol. Biol., 1999, vol. 289, pp. 645–657.

    Article  PubMed  CAS  Google Scholar 

  45. Takao, T., Shimizu, T., Ikegami, S., and Shimonishi, Y.,J. Protein Chem., 1997, vol. 16, pp. 409–413.

    Article  PubMed  CAS  Google Scholar 

  46. Madsen, P., Gromov, P.S., and Celis, J.E.,Electrophoresis, 1995, vol. 16, pp. 2258–2262.

    Article  PubMed  CAS  Google Scholar 

  47. Walter, P. and Blobel, G.,Methods Enzymol., 1983, vol. 96, pp. 84–93.

    Article  PubMed  CAS  Google Scholar 

  48. Gluzman, Y.,Cell, 1981, vol. 23, pp. 175–182.

    Article  PubMed  CAS  Google Scholar 

  49. Gromov, P.S., Celis, J.E., and Madsen, P.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Acad. Press, 1997, vol. 4, pp. 225–230.

    Google Scholar 

  50. Stenmark, H. and Zerial, M.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, vol. 4, pp. 201–204.

    Google Scholar 

  51. Celis, J.E., Lauridsen, J.B., and Basse, B.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds. San Diego: Academic Press, 1997, vol. 2, pp. 427–429.

    Google Scholar 

  52. Hochstrasser, D.F.,Proteome Research New Frontiers in Functional Genomics (Principles and Practice), Wilkins, M.R.,et al., New York: Springer Verlag, 1997, pp. 187–219.

    Google Scholar 

  53. Scheele, J.S., Rhee, J.M., and Boss, G.R.,Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 1097–1100.

    Article  PubMed  CAS  Google Scholar 

  54. Hausken, Z.E., Coghlan, V.M., and Scott, J.D.,Protein Targeting Protocols. Methods in Molecular Biology, Clegg, RA, Ed., Totowa, New Jersey: Humana Press, 1988, pp. 47–64.

    Google Scholar 

  55. Feizi, T.,Ciba Found Symp., 1989, vol. 145, pp. 62–74.

    PubMed  CAS  Google Scholar 

  56. Dejgaard, K. and Celis, J.E.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, vol. 4, pp. 482–486.

    Google Scholar 

  57. Lapetina, E.G., and Reep, B.R.,Proc. Natl. Acad. Sci. USA, 1987, vol. 84, pp. 2261–2265.

    Article  PubMed  CAS  Google Scholar 

  58. Hoffmann, H.J., Gromov, P., and Celis, J.E.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, vol. 4, pp. 450–454.

    Google Scholar 

  59. Gromov, P.S. and Celis, J.E.,Electrophoresis, 1994, vol. 15, pp. 474–481.

    Article  PubMed  CAS  Google Scholar 

  60. Gromov, P.S. and Celis, J.E.,Cell Biology. A Laboratory Handbook, Celis, J.E.et al., Eds., San Diego: Academic Press, 1997, vol. 4, pp. 409–419.

    Google Scholar 

  61. Celis, J.E., Ostergaard, M., Rasmussen, H.H.,et al., Electrophoresis, 1999, vol. 20, pp. 300–309.

    Article  PubMed  CAS  Google Scholar 

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Gromov, P.S., Celis, J.E. From genomics to proteomics. Mol Biol 34, 508–520 (2000). https://doi.org/10.1007/BF02759560

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